Sphingobium sp. YG1: YGS_C1P1052
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Entry
YGS_C1P1052 CDS
T05858
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spyg
Sphingobium sp. YG1
Pathway
spyg03030
DNA replication
spyg03430
Mismatch repair
spyg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YGS_C1P1052
03430 Mismatch repair
YGS_C1P1052
03440 Homologous recombination
YGS_C1P1052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spyg03032
]
YGS_C1P1052
03400 DNA repair and recombination proteins [BR:
spyg03400
]
YGS_C1P1052
Enzymes [BR:
spyg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YGS_C1P1052
DNA replication proteins [BR:
spyg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
YGS_C1P1052
DNA repair and recombination proteins [BR:
spyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
YGS_C1P1052
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
BBC99796
LinkDB
All DBs
Position
1:1130220..1133762
Genome browser
AA seq
1180 aa
AA seq
DB search
MPHAPFVPLRVFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDGCKDE
GVQPIIGAMLGILRPGRPANAPPVHDWIALYAQDAGGYDNICALVSMAHLDRPVEDVPHV
TIKALEGRTDGVIALTAGGEGALARLFAEDQPDAAVAYVERLEALFPDRLYIEICRRLDP
TEGRAEPQLLEMAYDRDLPLVATNPTCFAEPHFHEAHDVMLCIADSAYVETPDRRTSSPD
AWMKPVGEMKRLFEDLPEALANTLVVAQRCAIAAPKRKPILPSLAGDIEGESIMLRDQAT
AGLEARLAKAGIIGDEARKPYFDRLKFETDIIIQMGFPGYFLIVADFIKWAKDHDIPVGP
GRGSGAGSLVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQQ
KYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLERSLNGV
SEFRAEYDNDNQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLQQLVPLYRDPRSDMPV
TQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLAARGVHVDLDTLAWDDEAVYELLQRG
DTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNGAEEIEYPH
ILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVKAEMDAQRSRFVDG
CARSDIKPAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAEFYAGSMAFD
IHLTEKLTVFVDDMRRMGLTCLAPDLNRSEADFTVEAVPCEGEDKRLGFAVRYALGGLKG
VGEKAMEQLVAERAATGPFKSLDDFADRIEPRLLNRRQLESLAAAGAFDGIHEDRAGVHA
AAETILSVASSNAQARESGQGGLFGDVETPHADVRIPPHQAWTVADRMAQEKEAFGFYFS
AHPVDRYKHLADARGAKSYGLICQSPMPAPNAEGRSMTIMAAMVEDVRWRETKRGARYAN
ATFSDQSGQFQASCFDEEACKAIEELSKDGDCALLIVELDRLPGEETPRVTVRGAEPFRA
IASASRMELTVDIDTVQAVEALAALLAGAGGGRSEVFLRAPVGDGQAAKLFLGDHYSLGA
DQVDAIATIRGLTVHRFERMDVKADGYRTKMRRMAMRLAG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgccccatgctcctttcgttccgctgcgcgttttttcctccttcaccatgctggaaggg
gcgatcgaccccaagaagatcgccaagcaagcgaaagctttgggctttccggcggcggcg
atcacggaccggaacgggctttatggctcgatggccttttccgacgggtgcaaggatgag
ggcgtgcagccgatcatcggcgcgatgctggggatattacggccgggccgcccggccaat
gcgccgccggtgcatgactggatcgcgctttatgcgcaggatgcgggcggatacgacaat
atctgcgcgctggtgtcgatggcgcatctggaccggccggtcgaagacgtgccgcatgtg
acgatcaaggcgctggaggggcggaccgacggcgtcatcgcgttgacggcgggcggcgaa
ggcgcgctggcgcggttgttcgccgaagatcagccggacgcggcggtcgcttatgtcgag
cggcttgaagcgctgttcccggatcggctctatatcgagatttgccgccggctggacccc
accgagggcagagccgagccacaactgctcgaaatggcctatgatcgcgatctgccattg
gtcgcgaccaatccgacctgctttgccgagccgcatttccatgaggcgcatgacgtgatg
ctgtgtatcgcggacagcgcctatgtcgagacgcccgaccgccgcacaagctcgcccgac
gcctggatgaaaccggtgggcgagatgaagcgcctgttcgaggatctgcccgaggcgctg
gccaacacgctggtcgtcgcgcaacgctgcgccattgccgcgcccaagcgcaagccgatc
ctgcccagccttgcgggcgatatcgagggcgaaagcatcatgctgcgcgatcaggcgacg
gcggggctggaggcgcgactggccaaggccgggatcatcggggatgaggcgcgcaagccc
tatttcgatcggctgaaattcgagacggacatcatcatccagatgggttttcccggttac
ttcctgatcgtggccgacttcatcaagtgggcgaaggaccatgatattccggtgggtccg
ggtcgtggatcgggcgcggggtcgctggtcgcctgggcgctgaccatcaccgatcttgat
ccgttgcagcttggcttgctgttcgaacgcttcctgaacccggaacgcgtgtcgatgccc
gacttcgacatcgatttctgcgaaacgcggcgcggcgaggtgatccgttacgttcagcag
aaatatggtgcggaccatgtggcgcagatcattaccttcggtaagctgaaggcgcgcgcc
gtgttgaaggacacgggccgcgtgttgcagatgagctatgggcaggtcgatcggcttgcc
aagctggtgcccaatcatccgaccgatccgtggacgctggaacgatcgctgaacggcgtc
agcgagtttcgcgcggaatatgacaatgacaatcaggtcaagcgcctgatcgattatgcg
atgaagctggagggcttcccgcgccacagttccacccatgcggcgggcgtggtgatcggc
gatcggccgttgcagcaattggtgccgctttatcgcgacccgcgatcggacatgccggtg
acgcagttcgacatgaaatatgtcgagggcgccgggctggtgaaattcgactttctgggt
ctgaagaccctgtcggtgttgcagaaggcggtgcaattgctggcggcgcggggcgtgcat
gtcgacctcgacacgctcgcctgggatgacgaggcggtgtacgagctgctccagcgcggc
gacacggtcggcgtgttccagctggaatctgaaggcatgcgcaagacgctggcggccgtg
cgtccgaccaatttcggcgacatcatcgcgctggtgtcgctctaccgccctggcccgatg
gacaatattccgatgttcggtcgccgcaagaatggcgcggaagagattgaatatccgcac
attcttctgaagccgatcctggaagagacgtatggcatcttcgtttatcaggaacaggtg
atgcaggccgcgcagatcctggcgggctatagcctgggtgacgccgaccttctgcgccgc
gccatgggcaagaaggtgaaggcggagatggacgcgcagcggtcccgcttcgtggacggt
tgtgcgcgcagcgacatcaagccggctaaagcgaacgagttgttcgatttgatcgacaag
tttgcgggctatggtttcaacaaatcgcacgcggcggcctatgccttgctcgcttatcag
acggcgtggttgaaggcgcattatccggcggaattctatgccggatcgatggcattcgat
atccatctgaccgaaaaactgacggtgttcgtcgacgatatgcggcgcatgggactgacc
tgcctggcgccggatctgaaccgcagcgaggcggactttaccgtcgaggcggtgccttgt
gaaggcgaggataagaggctgggctttgccgtgcgctatgcgctgggcgggctgaagggc
gtgggcgaaaaggcgatggagcagctggtcgccgaacgtgcggcgaccgggccattcaag
tcgctcgatgatttcgccgaccggatcgagccgcgtctgctgaaccggcggcagttggaa
agcctggcggcggcgggggctttcgatggcatccatgaagaccgtgctggcgtgcatgcg
gcggcggaaaccatcttgtcggtcgcatcgagcaatgcgcaggcgcgcgaaagcggacag
ggcggtctattcggcgacgtcgagacaccccatgccgatgtgcgcattccgccgcatcag
gcttggaccgtggcggatcgcatggcgcaggagaaggaggcgttcggcttctatttctcc
gcccatccggtggaccggtacaagcatctggccgatgcgcggggcgccaaaagctatggc
ctgatctgccagtcgcccatgcccgcgcccaatgccgaagggcggtcgatgacgatcatg
gccgcaatggtcgaggatgtacgctggcgcgagacgaagcggggcgcgcgctatgcaaac
gccaccttctctgaccagagcgggcagtttcaggcgagttgcttcgatgaagaggcgtgc
aaggcaatcgaggaattgtcgaaggacggcgattgcgcgctgttgatcgtggaactggac
cggttgccgggcgaagagacaccgcgcgtcaccgtgcggggcgccgagccattccgcgcg
atcgcgagcgcatcgcgaatggagctgacggtcgatatcgacacggtacaggcggtcgag
gcgctggcggccttgctggccggggccggaggcgggcgcagcgaagtatttttgcgggcg
cccgtaggcgacggacaggctgcgaagctgtttctgggcgatcattacagcctgggcgcg
gatcaggtggatgcgatcgcgacgatcagggggctgacggtccacaggttcgagcgcatg
gatgtgaaggcggatggctaccgcaccaagatgcggcggatggccatgcggttggcgggg
tag
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