Sphingobium sp. YG1: YGS_C1P1854
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Entry
YGS_C1P1854 CDS
T05858
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spyg
Sphingobium sp. YG1
Pathway
spyg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spyg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
YGS_C1P1854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spyg03021
]
YGS_C1P1854
03400 DNA repair and recombination proteins [BR:
spyg03400
]
YGS_C1P1854
Enzymes [BR:
spyg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
YGS_C1P1854
Transcription machinery [BR:
spyg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
YGS_C1P1854
DNA repair and recombination proteins [BR:
spyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
YGS_C1P1854
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
IniB
B
MYO10_CC
Motif
Other DBs
NCBI-ProteinID:
BBD00599
LinkDB
All DBs
Position
1:1992015..1996178
Genome browser
AA seq
1387 aa
AA seq
DB search
MATKALPPISNTGAKKRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSDPSIGYVSGLEK
TLRSVFPIRDFAGTAEMDFVHYELEDPKYDVEECRQRGITYAAPMRVTLRLIVFEVDQDT
ETRSVLDIKEQDVYMGDMPLMTGNGTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHSSGK
YLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLFALGLTPEEILGEFYNKVT
YVRGEGGWVIPYLAEAWRGLKPAFDIVDAASGEVVFAAGHKISPRAANKAEKDGLATLLI
PTEEVYGRYSAYDLINESTGEIYIEAGDEVSPENLEKLDKAGVDRLELLDIDHVGTGAWI
RNTLKADKAEDRDQALSDIYRVMRPGEPPTKETAEALFAGLFFDPERYDLSAVGRVKLNM
RLDLDAEDTVTTLRVEDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVG
LLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHK
RRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRVNKYGFI
ETPYRKVVDNKVTDDVVYLSAMEEAKHTIAQANAEVNADGHFVEDLISSREAGEFLMAPR
DHITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGT
VARDSGAAVASKRAGIVDQVDATRIVIRATGDIEAGQSGVDIYTLQKFQRSNQDTCINQR
PLVKVGDLIEAGDVIADGPSTEFGELALGRNTLVAFMPWNGYNYEDSILISERIVKDDVF
TSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKIT
PKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDKDERAMAI
EREEIDRLAKDREDERGILNRATFNRLQEMLTGQTASAAPKGIKKGVVIDEALLGEVERH
EWWKFAVEDDTRQAQIEAIKGQYDEAVKSIVDKFEDRVDKLQRGDELPPGVLKMVKVFVA
VKRKLQPGDKMAGRHGNKGVISRILPIEDMPFLEDGTHVDIVLNPLGVPSRMNVGQIFET
HLGWAARGLGQQLKHALEDWREANPNPQPGDMPDAVKERLLTSYGERYAEQIEARTPEQI
IDLAEHLQRGIPMATPVFDGAREADVSDMLERAGLHTSGQSDLYDGRTGDRFDRKVTVGI
IYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQE
MLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELAAMDATEDDD
GLAQAAE
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaggctctcccccccatcagcaacaccggcgctaagaagcgcatccgcaag
gtgttcggcgacatccacgaagtggtgcagatgccgaacctgatcgaggttcagagggag
agttacgaacagttcctgcgttccgatccgtcgatcggctatgtgtcgggcctggaaaag
acgctgcgcagcgtcttcccgatccgcgacttcgccggcaccgccgaaatggacttcgtc
cattatgagctggaagacccgaaatacgacgttgaggaatgccgtcagcgcggcatcacc
tatgcagcgccgatgcgcgttaccctgcgcctgatcgtgttcgaagtcgatcaggacacc
gaaacccgctcggtcctggatatcaaggagcaggacgtctacatgggcgacatgcccctg
atgacgggcaacggcaccttcatcgtcaacggcaccgaacgcgtcatcgtcagccagatg
caccgttcgccgggcgtcctgttcgaccatgaccgtggcaagacccactcgtcgggcaaa
tatctcttcgccgcgcgcgtcattccgtaccgtggttcgtggctcgacttcgaattcgac
gccaaggacatcgtcaacgtccgtatcgaccgcaagcgcaagctgccggtcacggcgctg
ctgttcgcgctcggcctgacgccggaagaaattctgggcgaattctataacaaggttacc
tatgtccgcggtgaaggcggctgggtcatcccctatctcgccgaagcatggcgcggcctg
aagccggcgttcgacatcgtcgacgccgcttctggcgaagtcgtgttcgccgccggtcac
aagatcagcccccgcgccgccaacaaggcggaaaaggacggcctggccacgctgctgatc
ccgaccgaggaagtctatggccgctacagcgcctatgacctcatcaacgagagcaccggc
gaaatctacatcgaggccggcgacgaagtgtcgcctgaaaatctcgaaaagctggacaag
gctggcgtcgaccgtcttgaactgctggatatcgaccatgtcggcaccggtgcatggatc
cgcaatacgttgaaggccgacaaggccgaagaccgcgaccaggccctctccgacatctat
cgcgtcatgcgccccggcgaaccgccgacgaaggaaaccgccgaagctctcttcgccggc
ctgttcttcgatccggaacgctacgacctctcggccgtgggccgcgtgaagctgaacatg
cgtctcgacctcgatgccgaggatacggtcaccaccctgcgcgtcgaggacatcctcgcc
gtggtcaaggaactggtgaacctcaaggacggcaagggcgaaatcgacgatatcgataac
ctcggtaaccgtcgcgtccgttcggtcggcgaattgctggaaaaccagtatcgcgtcggc
ctgctgcgcatggaacgcgcggtcaaggaacgcatgtcgtctgttgacgtgtccacggtg
atgccgaacgacctgatcaacgcgaagcccgccgtggccgccgtgcgtgaattcttcggc
tcgtcgcagctgtcgcagttcatggatcagaccaacccgctgtcggaagtcacccacaag
cgccgcgtgtcggcacttgggccgggcggcctgacgcgtgagcgcgcaggcttcgaagtc
cgcgacgttcacccgacccattatggccgtatctgcccgatcgaaacgccagaaggcccg
aacatcggtctgatcaactcgctggcgactttcagccgcgtcaacaaatatggcttcatc
gaaacgccgtaccgcaaggtcgtggacaacaaggtcaccgacgacgtcgtctatctgtcg
gcgatggaagaggccaagcacacgatcgcgcaggccaacgccgaagtgaatgccgacggt
catttcgtcgaggatctgatctcctcgcgcgaagccggcgaattcctgatggcgccgcgc
gaccacatcaccctgatggacgtcagccccaagcagctggtgtcggtcgccgcatcgctc
attccgttcctggaaaacgatgacgccaaccgcgcgctcatgggatcgaacatgcagcgt
caggccgtgcctctggtacgcgccgaagcgccgttcgtgggcaccggcatggaaggcacg
gtcgcccgtgactccggcgctgccgtcgcgtccaagcgtgcgggcatcgtcgatcaggtc
gacgcgacccgtatcgtcatccgcgcaaccggcgacatcgaagccggccagtcgggcgtc
gacatctacaccctccagaagttccagcggtccaaccaggacacctgcatcaaccagcgt
ccgctggtgaaggtgggcgacctgatcgaagccggcgacgtgatcgccgacggcccgtcg
accgagttcggcgagctggcgctgggccgcaacacgctcgtcgcgttcatgccctggaac
ggctacaactacgaagactccatcctgatctccgaacggatcgtgaaggacgacgtcttc
acctcgatccatatcgaggagttcgaggtcatggcccgcgacaccaagctgggaccggag
gacatcacccgcgacatcccgaacgtcggtgaagaagcgctgcgcaacctcgacgaggct
ggcatcgtgtatatcggcgccgaagtggagccgggcgacattctggtcggcaagatcacc
cccaagggtgaatcgccgatgaccccggaagaaaagctgctccgcgcgatcttcggtgaa
aaggcgagcgacgtgcgcgacacgtccctgcgtctgccgccgggcgttgccggcaccgtc
gtggaagtccgcgtgttcaaccgtcacggcatcgacaaagacgaacgtgccatggcgatc
gagcgggaggaaatcgaccgcctcgccaaggaccgtgaagacgaacgtggcatcctcaac
cgtgcgaccttcaaccgccttcaggaaatgctgaccggtcagacggcttcggccgcgccc
aagggcatcaagaagggcgttgtcatcgacgaggccctgctgggcgaagtcgagcgtcac
gaatggtggaagttcgcggtcgaggacgacacccgtcaggcccagatcgaagcgatcaag
ggtcagtatgacgaagcggtgaagtcgatcgtcgacaagtttgaggaccgcgtcgacaag
ctgcagcgtggcgacgaactgccgccgggtgtgctgaagatggtgaaggtcttcgttgcg
gtgaagcgcaagctgcagccgggcgacaagatggccggccgtcacggtaacaagggtgtc
atttcgcgcatcctgccgatcgaggacatgccgttcctggaagacggcacccatgtcgac
atcgtgctgaacccgctgggcgtgccgtcgcgtatgaacgtcgggcagatcttcgaaacg
catctgggctgggctgcccgcggccttggccagcagctcaagcacgcgctggaagactgg
cgtgaggccaatccgaacccgcagccgggcgacatgcccgacgcggtcaaggaacggctg
ctgacctcctatggtgagcgctatgccgagcagatcgaagcccgtacgcccgaacagatc
atcgatctggccgagcatctccagcggggtatcccgatggcgacaccggtgttcgacggc
gcccgcgaagcggacgtgtcggacatgttggaacgcgcaggcctgcacacgtcgggtcag
tcggatctgtatgacggccgcaccggcgaccgtttcgaccgcaaggtgaccgtcggcatc
atctacatgttgaagctgcatcacttggtcgacgacaagatccacgcccgttcgatcggg
ccgtactcgctcgtcacgcagcagccgctgggtggtaaggcgcagttcggtggtcagcgc
ttcggtgaaatggaagtgtgggcgctccaggcctatggcgctgcctacacgctccaggaa
atgctgacggtgaagtccgatgacgtcgtcggtcgtaccaaggtctatgaggcgatcgtc
aagggcgacgacacgttcgaggccggcattcccgaaagcttcaacgtgctggtcaaggaa
atgcgctcgctgggcctcaatgtcgaactcgccgcgatggacgcgaccgaagacgacgac
ggcttggcgcaggcggcggaataa
DBGET
integrated database retrieval system
