Sphingobium sp. YG1: YGS_C1P1855
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Entry
YGS_C1P1855 CDS
T05858
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spyg
Sphingobium sp. YG1
Pathway
spyg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spyg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
YGS_C1P1855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spyg03021
]
YGS_C1P1855
03400 DNA repair and recombination proteins [BR:
spyg03400
]
YGS_C1P1855
Enzymes [BR:
spyg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
YGS_C1P1855
Transcription machinery [BR:
spyg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
YGS_C1P1855
DNA repair and recombination proteins [BR:
spyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
YGS_C1P1855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BBD00600
UniProt:
A0A2Z6AFD9
LinkDB
All DBs
Position
1:1996264..2000550
Genome browser
AA seq
1428 aa
AA seq
DB search
MNELTNFANPVQKAETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKQMLMDLDLEGEKQALLDELAVTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMERVGEPGEGMLLSDMQEVHQALYA
KAVTLHSKIISRVPQTDENGQQYMKRFETTPGRMLLGECLPKSHKVPFDAVNRLLTKKDV
GDVIDEVYRHTGQKDTVLFADAIMALGFRHAFQAGISFGKDDMVIPDSKEGSVAETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDVVANAMMDEIRAMPIDPDTGRQKQINSIYM
MAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCTIVEDDCGTEKALEMKAIVQGGSVIASLGERILGRTT
AQDIVDSKDGSIVIPIGTLLDEPMIAQIEAIGTQAVKIRSPLICESKMGVCGKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSNLEALADGTIELRDMPT
ITDKNGRRLSLARNGEIAIIDSEGRERETHRLPYGATILFADGDAVKKGDRFAEWDPFTM
PVITEKPGIVKYVDLIDNKTLTEQTDEATGIAQRVVIEHRGAARTKEDLRPRLTLMDDSS
GEAARYMLAVGATLSVDDGAQVQAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKDN
AIIAKVSGRVQFLKDYKAKRKIAINPEDGGEPVEYLIPKSKVIDVQEGDFVKRGDNLIGG
SPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIETIVRQMLQKVEIIESGDTT
LLVGEQIDREEMDEINAKLQPGFAPAAGKPVLLGITKASLQTRSFISAASFQETTRVLTE
AAVQGKKDTLVGLKENVIVGRLIPAGTGAGMNRLRVAASSRDAALRAALRASSQVDLIAP
KSAAAERAAELAQGPEAAIGNDPLAAIEGETHGSDADAGDYLLKSDGE
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaacttcgcgaacccggtccagaaggccgaaaccttcgaccagatc
cagatcggccttgcctcgcccgagcgcatccgctcctggtccttcggcgagatcaagaag
ccggaaaccatcaattatcgcacgttcaagcccgagcgtgacggcttgttctgcgcgcgc
atcttcggtccgatcaaggattatgaatgcctgtgcggcaagtataagcgcatgaaatat
aagggcatcgtctgcgaaaagtgcggtgtcgaagttaccgtgagcaaggtgcgccgcgag
cgcatgggccatatcgagctggccgcgccggtcgcacacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagttgaagcagctggaacgcgtcctctac
ttcgaatcctatatcgtcaccgaacccggcctgacgccgctggagaagttccagctgctg
accgaagacgaactgctcgacgcgcaggacgaatatggcgaagacgccttctcggccggc
atcggcgctgaagccgtcaagcagatgctgatggatctcgacctggaaggcgagaagcag
gcgctgctggacgagctggccgtcaccaagtcggaactgaagcccaagaagatcatcaag
cgcctgaaggtcgtcgaaagcttcctggaatcgggcaaccgccccgaatggatgatcctg
gacgttgtgccggtcatcccgccggaactgcgtccgctggtgccgctggacggtggtcgt
ttcgcgacgtcggatcttaacgatctgtatcgccgcgtcatcaaccgcaacaaccgtttg
aagcgcctgatggaactgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaagccgtcgacgccctgttcgacaatggccgtcgcggccgtgtcatcaccggtgcc
aacaagcgcccgctcaagtcgctgtccgacatgctcaagggtaagcagggccgcttccgt
cagaaccttctgggtaagcgcgtcgactattcgggtcgttcggtcatcgtgaccggtcct
gagttgaagctgcatcagtgcggcctgcccaagaagatggcgctcgaactgttcaagccg
ttcatctacgcgcgtctggatgccaagggtctgtccatgaccctgaagcaggccaagaag
tgggtcgagaaggaacgcaaggaagtctgggacatcctggacgaggtcatccgcgaacat
ccggtgatgctgaaccgcgcgcccacgcttcaccgtctgggcatccaggcgttcgaaccc
gtgctgatcgaaggcaaggcgatccagctgcacccgctcgtctgctcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgtaccgctctcgctggaagcccagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccgatc
atcgttccttcgcaggacatggtcctgggtatctattatctgtcgatggaacgtgtgggc
gaaccgggcgaaggcatgctgctgtccgacatgcaggaggtccatcaggccctctatgcc
aaggccgtcaccctgcactcgaagatcatcagccgcgtgccgcagaccgacgaaaacggt
cagcagtatatgaagcgcttcgagacgaccccagggcgcatgctgttgggcgaatgtctg
cccaagtcgcacaaggtgcccttcgacgccgtcaatcgccttctgaccaagaaggacgtg
ggcgacgtgatcgacgaggtctatcgtcacaccggtcagaaggacacggtgctgttcgcc
gacgccatcatggcgctgggcttccgccatgcattccaggccggcatctcgttcggcaag
gacgacatggtgatcccggattcgaaggaaggctccgtcgccgaaaccaaggcgctggtg
gccgactatgagcagcagtatcaggacggtctgatcacgcagcaggaaaagtacaacaag
gtcatcgacgcctggagccgttgcggcgacgtggtggcgaacgccatgatggacgaaatc
cgtgccatgccgatcgatccggacaccggtcgccagaagcagatcaactcgatctacatg
atggcgcactcgggtgcccgtggtagccaagcccagatgaagcagctggccggtatgcgc
ggcctgatggccaagccttcgggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggtctgaccgtccttgaatacttcaactccacccacggcgcccgtaagggactggcc
gacaccgcgctcaagacggcgaactcgggttacctgacccgccgtctggtcgacgtgtcg
caggactgcacgatcgtcgaggacgattgcggcaccgaaaaggcgctggagatgaaggcc
atcgttcaaggtggttccgtcatcgcctcgctcggcgagcgtatcctgggccgcaccacg
gcacaggacatcgtcgacagcaaggatggcagcatcgtcattccgatcggcactctgctg
gacgaaccgatgatcgcccagatcgaagccatcggcacgcaggccgtgaagatccgcagc
ccgctgatctgcgaaagcaagatgggcgtgtgcggcaaatgctacggtcgtgacctggcc
cgcggtaccccggtgaacatcggtgaagccgtcggcgtcatcgcggctcagtcgatcggt
gaaccgggcacgcagctgaccatgcgtaccttccacatcggcggcgcggcgaacttcaac
gaaacgtcgaacctggaggctctggccgacggtacgatcgaactgcgcgacatgcccacg
atcaccgacaagaacggtcgccgtctgtcgctcgcccgcaacggcgagatcgcgatcatc
gacagcgaaggccgcgaacgcgaaacgcaccgcctgccttacggcgccaccatcctgttc
gcagatggcgatgccgtgaagaagggcgaccgcttcgccgagtgggatcccttcaccatg
ccggtgatcacggaaaagcccggtatcgttaagtatgtcgacctgatcgacaacaagacg
ctgaccgagcagaccgacgaagccaccggtatcgcccagcgcgtggtgatcgaacatcgt
ggtgctgcccgcaccaaggaagatctccgtccgcgcctgaccctgatggacgacagttcg
ggcgaagccgcacgctatatgctggcggtgggtgcgaccctgtcggtcgacgatggtgcg
caggttcaggccggtgacgtgctggcgcgtgtcagccgtgaagcggccaagacccgtgac
atcaccggtggtctgccgcgcgtcgccgaactgttcgaagcccgcaagcccaaggacaat
gcgatcattgccaaggtgtcgggccgcgtccagttcctgaaggattacaaggcgaagcgt
aagatcgccatcaatccggaagatggcggcgagccggtcgaatatctgatccccaagagc
aaggtgatcgacgttcaggaaggcgacttcgtgaagcgcggcgacaacctgatcggcggt
tcgcccgatccgcatgacattctggaagtgctgggtatcgagcctctggccgaatatctg
gtcgccgaaatccaggaagtctatcgcttgcagggcgtgaagatcaacgacaagcacatc
gaaacgatcgttcgtcagatgttgcagaaggtcgagatcatcgagtccggcgacaccacc
ttgctggtgggcgagcagatcgaccgcgaggaaatggacgagatcaacgccaagctccag
ccgggcttcgcgcccgctgctggcaagccggtgctgctgggcatcaccaaggcctcgctc
cagacccgttcgttcatctcggccgcgtcgttccaggaaaccacccgcgtcctcacggaa
gcggcggtccagggcaagaaggacacgctcgttggcctgaaggaaaacgtcatcgtcggc
cgcctgatcccggcgggtaccggtgccggcatgaaccgcctgcgcgtcgccgcttcgtcg
cgtgacgcggcgctgagggccgcgctgcgcgcgtccagccaggtggacctgatcgcaccc
aagtcggccgccgccgaacgggctgccgaactggcgcagggtccggaagcggcgatcggc
aacgatccgctggctgccatcgaaggggaaacccatggcagcgacgcggatgcgggcgat
tacctgctgaagagcgacggcgaataa
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integrated database retrieval system