KEGG   Sphingobium sp. YG1: YGS_C1P1855
Entry
YGS_C1P1855       CDS       T05858                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
spyg  Sphingobium sp. YG1
Pathway
spyg03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:spyg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    YGS_C1P1855
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spyg03021]
    YGS_C1P1855
   03400 DNA repair and recombination proteins [BR:spyg03400]
    YGS_C1P1855
Enzymes [BR:spyg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     YGS_C1P1855
Transcription machinery [BR:spyg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     YGS_C1P1855
DNA repair and recombination proteins [BR:spyg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      YGS_C1P1855
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RPOC_hybrid
Other DBs
NCBI-ProteinID: BBD00600
UniProt: A0A2Z6AFD9
LinkDB
Position
1:1996264..2000550
AA seq 1428 aa
MNELTNFANPVQKAETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKQMLMDLDLEGEKQALLDELAVTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMERVGEPGEGMLLSDMQEVHQALYA
KAVTLHSKIISRVPQTDENGQQYMKRFETTPGRMLLGECLPKSHKVPFDAVNRLLTKKDV
GDVIDEVYRHTGQKDTVLFADAIMALGFRHAFQAGISFGKDDMVIPDSKEGSVAETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDVVANAMMDEIRAMPIDPDTGRQKQINSIYM
MAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCTIVEDDCGTEKALEMKAIVQGGSVIASLGERILGRTT
AQDIVDSKDGSIVIPIGTLLDEPMIAQIEAIGTQAVKIRSPLICESKMGVCGKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSNLEALADGTIELRDMPT
ITDKNGRRLSLARNGEIAIIDSEGRERETHRLPYGATILFADGDAVKKGDRFAEWDPFTM
PVITEKPGIVKYVDLIDNKTLTEQTDEATGIAQRVVIEHRGAARTKEDLRPRLTLMDDSS
GEAARYMLAVGATLSVDDGAQVQAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKDN
AIIAKVSGRVQFLKDYKAKRKIAINPEDGGEPVEYLIPKSKVIDVQEGDFVKRGDNLIGG
SPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIETIVRQMLQKVEIIESGDTT
LLVGEQIDREEMDEINAKLQPGFAPAAGKPVLLGITKASLQTRSFISAASFQETTRVLTE
AAVQGKKDTLVGLKENVIVGRLIPAGTGAGMNRLRVAASSRDAALRAALRASSQVDLIAP
KSAAAERAAELAQGPEAAIGNDPLAAIEGETHGSDADAGDYLLKSDGE
NT seq 4287 nt   +upstreamnt  +downstreamnt
atgaacgaactgaccaacttcgcgaacccggtccagaaggccgaaaccttcgaccagatc
cagatcggccttgcctcgcccgagcgcatccgctcctggtccttcggcgagatcaagaag
ccggaaaccatcaattatcgcacgttcaagcccgagcgtgacggcttgttctgcgcgcgc
atcttcggtccgatcaaggattatgaatgcctgtgcggcaagtataagcgcatgaaatat
aagggcatcgtctgcgaaaagtgcggtgtcgaagttaccgtgagcaaggtgcgccgcgag
cgcatgggccatatcgagctggccgcgccggtcgcacacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagttgaagcagctggaacgcgtcctctac
ttcgaatcctatatcgtcaccgaacccggcctgacgccgctggagaagttccagctgctg
accgaagacgaactgctcgacgcgcaggacgaatatggcgaagacgccttctcggccggc
atcggcgctgaagccgtcaagcagatgctgatggatctcgacctggaaggcgagaagcag
gcgctgctggacgagctggccgtcaccaagtcggaactgaagcccaagaagatcatcaag
cgcctgaaggtcgtcgaaagcttcctggaatcgggcaaccgccccgaatggatgatcctg
gacgttgtgccggtcatcccgccggaactgcgtccgctggtgccgctggacggtggtcgt
ttcgcgacgtcggatcttaacgatctgtatcgccgcgtcatcaaccgcaacaaccgtttg
aagcgcctgatggaactgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaagccgtcgacgccctgttcgacaatggccgtcgcggccgtgtcatcaccggtgcc
aacaagcgcccgctcaagtcgctgtccgacatgctcaagggtaagcagggccgcttccgt
cagaaccttctgggtaagcgcgtcgactattcgggtcgttcggtcatcgtgaccggtcct
gagttgaagctgcatcagtgcggcctgcccaagaagatggcgctcgaactgttcaagccg
ttcatctacgcgcgtctggatgccaagggtctgtccatgaccctgaagcaggccaagaag
tgggtcgagaaggaacgcaaggaagtctgggacatcctggacgaggtcatccgcgaacat
ccggtgatgctgaaccgcgcgcccacgcttcaccgtctgggcatccaggcgttcgaaccc
gtgctgatcgaaggcaaggcgatccagctgcacccgctcgtctgctcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgtaccgctctcgctggaagcccagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccgatc
atcgttccttcgcaggacatggtcctgggtatctattatctgtcgatggaacgtgtgggc
gaaccgggcgaaggcatgctgctgtccgacatgcaggaggtccatcaggccctctatgcc
aaggccgtcaccctgcactcgaagatcatcagccgcgtgccgcagaccgacgaaaacggt
cagcagtatatgaagcgcttcgagacgaccccagggcgcatgctgttgggcgaatgtctg
cccaagtcgcacaaggtgcccttcgacgccgtcaatcgccttctgaccaagaaggacgtg
ggcgacgtgatcgacgaggtctatcgtcacaccggtcagaaggacacggtgctgttcgcc
gacgccatcatggcgctgggcttccgccatgcattccaggccggcatctcgttcggcaag
gacgacatggtgatcccggattcgaaggaaggctccgtcgccgaaaccaaggcgctggtg
gccgactatgagcagcagtatcaggacggtctgatcacgcagcaggaaaagtacaacaag
gtcatcgacgcctggagccgttgcggcgacgtggtggcgaacgccatgatggacgaaatc
cgtgccatgccgatcgatccggacaccggtcgccagaagcagatcaactcgatctacatg
atggcgcactcgggtgcccgtggtagccaagcccagatgaagcagctggccggtatgcgc
ggcctgatggccaagccttcgggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggtctgaccgtccttgaatacttcaactccacccacggcgcccgtaagggactggcc
gacaccgcgctcaagacggcgaactcgggttacctgacccgccgtctggtcgacgtgtcg
caggactgcacgatcgtcgaggacgattgcggcaccgaaaaggcgctggagatgaaggcc
atcgttcaaggtggttccgtcatcgcctcgctcggcgagcgtatcctgggccgcaccacg
gcacaggacatcgtcgacagcaaggatggcagcatcgtcattccgatcggcactctgctg
gacgaaccgatgatcgcccagatcgaagccatcggcacgcaggccgtgaagatccgcagc
ccgctgatctgcgaaagcaagatgggcgtgtgcggcaaatgctacggtcgtgacctggcc
cgcggtaccccggtgaacatcggtgaagccgtcggcgtcatcgcggctcagtcgatcggt
gaaccgggcacgcagctgaccatgcgtaccttccacatcggcggcgcggcgaacttcaac
gaaacgtcgaacctggaggctctggccgacggtacgatcgaactgcgcgacatgcccacg
atcaccgacaagaacggtcgccgtctgtcgctcgcccgcaacggcgagatcgcgatcatc
gacagcgaaggccgcgaacgcgaaacgcaccgcctgccttacggcgccaccatcctgttc
gcagatggcgatgccgtgaagaagggcgaccgcttcgccgagtgggatcccttcaccatg
ccggtgatcacggaaaagcccggtatcgttaagtatgtcgacctgatcgacaacaagacg
ctgaccgagcagaccgacgaagccaccggtatcgcccagcgcgtggtgatcgaacatcgt
ggtgctgcccgcaccaaggaagatctccgtccgcgcctgaccctgatggacgacagttcg
ggcgaagccgcacgctatatgctggcggtgggtgcgaccctgtcggtcgacgatggtgcg
caggttcaggccggtgacgtgctggcgcgtgtcagccgtgaagcggccaagacccgtgac
atcaccggtggtctgccgcgcgtcgccgaactgttcgaagcccgcaagcccaaggacaat
gcgatcattgccaaggtgtcgggccgcgtccagttcctgaaggattacaaggcgaagcgt
aagatcgccatcaatccggaagatggcggcgagccggtcgaatatctgatccccaagagc
aaggtgatcgacgttcaggaaggcgacttcgtgaagcgcggcgacaacctgatcggcggt
tcgcccgatccgcatgacattctggaagtgctgggtatcgagcctctggccgaatatctg
gtcgccgaaatccaggaagtctatcgcttgcagggcgtgaagatcaacgacaagcacatc
gaaacgatcgttcgtcagatgttgcagaaggtcgagatcatcgagtccggcgacaccacc
ttgctggtgggcgagcagatcgaccgcgaggaaatggacgagatcaacgccaagctccag
ccgggcttcgcgcccgctgctggcaagccggtgctgctgggcatcaccaaggcctcgctc
cagacccgttcgttcatctcggccgcgtcgttccaggaaaccacccgcgtcctcacggaa
gcggcggtccagggcaagaaggacacgctcgttggcctgaaggaaaacgtcatcgtcggc
cgcctgatcccggcgggtaccggtgccggcatgaaccgcctgcgcgtcgccgcttcgtcg
cgtgacgcggcgctgagggccgcgctgcgcgcgtccagccaggtggacctgatcgcaccc
aagtcggccgccgccgaacgggctgccgaactggcgcagggtccggaagcggcgatcggc
aacgatccgctggctgccatcgaaggggaaacccatggcagcgacgcggatgcgggcgat
tacctgctgaagagcgacggcgaataa

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