Sphingobium sp. YG1: YGS_C1P2238
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Entry
YGS_C1P2238 CDS
T05858
Name
(GenBank) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
spyg
Sphingobium sp. YG1
Pathway
spyg04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
spyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
YGS_C1P2238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spyg03019
]
YGS_C1P2238
03009 Ribosome biogenesis [BR:
spyg03009
]
YGS_C1P2238
04131 Membrane trafficking [BR:
spyg04131
]
YGS_C1P2238
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spyg04147
]
YGS_C1P2238
Messenger RNA biogenesis [BR:
spyg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
YGS_C1P2238
Ribosome biogenesis [BR:
spyg03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
YGS_C1P2238
Membrane trafficking [BR:
spyg04131
]
SNARE
SNARE associated proteins
Others
YGS_C1P2238
Autophagy
Aggrephagy
Other aggrephagy associated proteins
YGS_C1P2238
Exosome [BR:
spyg04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
YGS_C1P2238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_22
AAA_5
CDC48_2
AAA_33
AAA_2
AAA_14
TIP49
NACHT
IstB_IS21
NPHP3_N
AAA_28
AAA_18
nSTAND3
RNA_helicase
AAA_7
Mg_chelatase
AAA_30
AAA_17
AAA_24
Sigma54_activat
ABC_tran
Zeta_toxin
AAA_11
AAA_3
AAA_19
DUF815
TsaE
ATPase
Parvo_NS1
AAA_25
NB-ARC
SLFN-g3_helicase
bpMoxR
PhoH
Sigma54_activ_2
Vps4_C
Viral_helicase1
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
BBD00983
LinkDB
All DBs
Position
1:complement(2397220..2399514)
Genome browser
AA seq
764 aa
AA seq
DB search
MADQEQEGRRIQVANARPEDAGRGLARLPLTVMAQLQLAEGDVVEIVGKRATPARVVRPY
KEDEGLDVLRLDGLQRANAGVGSGDFVQIMKAEPRAAQRVVFAPAQNNLRLQGNPDALKR
VFYQRPLTSGDVVATAGQQQVPPNDMPPQLRQMLAAPAYALQEIRLVVVSTVPKGIVHID
ADTEVELRAEYEEPRESRRADVTYDDVGGMADAIDQLREMVELPLRYPELFTRLGVDPPK
GVLLHGPPGTGKTRLARAVANESDAEFFLINGPEIMGSAYGESEKQLREIFEAAAKAAPS
ILFIDEIDSIAPKRGQVTGETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRR
PGRFDREIIVGVPDERGRREILGIHTRGMPLGDRVDLAELARMTYGFVGADLAALTREAA
IETVRRFMPRLNLEDGTIPPDVLEELSVTREDFLSAIKRVQPSAMREVMVQAPNIGWSDI
GGLDDAQMRLKEGVELPLKDPDAFRRIGIRPAKGFLLYGPPGTGKTLLAKAVAREAQANF
IATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPAVTERV
VNTILAEMDGLEELQSVVVIGATNRPTLIDPALLRPGRFDELIYVPVPDEAGRRRILGIH
TAKMPLADDVDLDRLARETERFTGADLEDLVRRAGLFALRQSLSVDKVTQAHFESGLEDT
RASVTPEMEREYEQIQAQLKQRAMQVDPIGFIAPGMVRSRDRSD
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
gtggctgatcaggaacaggaaggacgccggattcaggtcgccaatgcgcggccggaggat
gcgggccgcggtttggcgcgcttgccgctgaccgtcatggcgcaattgcagctggccgaa
ggcgatgtggtcgagatcgtcggcaagcgcgcgacgcccgcacgggtggtgcgcccatat
aaggaggatgaagggctggacgtgcttcgcctcgacgggttgcagcgcgccaatgccggg
gtggggtcgggcgacttcgtccagatcatgaaggcggaaccgcgtgccgcgcagcgggtc
gtgttcgcacctgcacaaaataatctacgactacagggcaaccccgatgcgttgaagcgg
gtcttctaccaacggccgctgacgtccggcgatgtcgtcgcgacggccgggcagcagcag
gtgccccccaacgacatgccgccgcaactgcgccagatgctggcggcgccggcctatgcc
ttgcaggaaatccggctggtcgtcgtgtccaccgtgcccaagggcatcgtccatatcgac
gcggacaccgaagtggagctgcgcgccgaatatgaggagccgcgcgaatcgcgccgcgcc
gatgtgacctatgatgatgtcggcggcatggccgatgcgatcgaccagctgcgcgagatg
gtggagttgccgctgcgctatcccgaactcttcacgcggctgggcgtcgatccgcccaag
ggcgtgttgctgcatggcccgccgggcacgggcaagacgcgcctcgctcgcgcggtcgcc
aatgaatcggacgcggaatttttcctgatcaacggtcccgaaatcatgggatcggcctat
ggcgagtcggaaaagcagctgcgcgagatattcgaggcggcggcgaaagcggcaccctcg
atcctgttcatcgacgagatcgattcgattgcgcccaagcgaggccaagtgactggcgag
acggaaaagcggctcgtcgcgcaactgctgacgctgatggatgggctggagccgcgcacc
aatctggtcgtcatcgctgccaccaaccggcccgaagcgatcgacgaagcgctgcggcgg
cccggccgcttcgaccgcgagatcatcgtcggcgtccccgacgagcgcggccggcgtgag
atattgggcatccatacgcgcggaatgccgctgggcgaccgggtcgacctcgccgaactg
gcgcgcatgacctatggctttgttggtgcggaccttgccgcgctgacccgtgaggccgcg
atcgagacggtacgccgcttcatgccgcgcctcaatctggaagacggcacgatcccgccc
gacgtgctggaggagctgtctgtcacgcgggaggatttcctttcagcgatcaagcgcgtc
cagccgtccgctatgcgcgaagtgatggtgcaggcgcccaatatcggctggtccgatatc
ggggggctggacgacgcgcagatgcggttgaaggaaggggtcgagctgccgctgaaagac
cccgatgctttccgccgcatcggcattcgcccggccaagggcttcctgctctacggcccg
cccggcaccggcaagaccttgctggccaaggcggtggcgcgcgaagcgcaggccaatttc
atcgcgaccaaatcgagcgatctcctgtccaaatggtatggggaaagcgagcagcagatc
gcgcgcctcttcgcccgcgcgcggcaggtggcgcccacggtcatcttcatcgacgaactg
gacagtctggtccccgcgcgcggcggggggcttggcgagccggcggtgacggagcgggtg
gtgaacacgatcctcgccgaaatggacgggctggaggagttgcagtcggtggtcgtcatc
ggcgccaccaaccgcccgacgttgatcgatccggcgctgctgcgacctgggcggttcgat
gagctgatctatgtgccggtgcccgacgaagcgggccgccgtcgcatattgggcatccat
acggccaagatgccgctggccgacgatgtcgatctggatcggctggcgcgggagacggag
cgcttcaccggcgccgatctggaagacctcgtccgccgcgccggcctgttcgcgctgcgc
cagtcgctttcggtcgacaaggtgacgcaggcccatttcgaaagcgggctggaggacaca
cgcgcgtccgtcacgcccgaaatggagcgcgaatatgagcagatccaggcacaattgaag
cagcgggcgatgcaggtcgatcccatcggcttcatcgcgccgggcatggtgcgatcgcgc
gatcgcagcgattga
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