KEGG   Sphingobium sp. YG1: YGS_C1P2238
Entry
YGS_C1P2238       CDS       T05858                                 
Name
(GenBank) transitional endoplasmic reticulum ATPase
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
spyg  Sphingobium sp. YG1
Pathway
spyg04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:spyg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    YGS_C1P2238
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spyg03019]
    YGS_C1P2238
   03009 Ribosome biogenesis [BR:spyg03009]
    YGS_C1P2238
   04131 Membrane trafficking [BR:spyg04131]
    YGS_C1P2238
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:spyg04147]
    YGS_C1P2238
Messenger RNA biogenesis [BR:spyg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     YGS_C1P2238
Ribosome biogenesis [BR:spyg03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    YGS_C1P2238
Membrane trafficking [BR:spyg04131]
 SNARE
  SNARE associated proteins
   Others
    YGS_C1P2238
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    YGS_C1P2238
Exosome [BR:spyg04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   YGS_C1P2238
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N AAA_16 RuvB_N AAA_22 AAA_5 CDC48_2 AAA_33 AAA_2 AAA_14 TIP49 NACHT IstB_IS21 NPHP3_N AAA_28 AAA_18 nSTAND3 RNA_helicase AAA_7 Mg_chelatase AAA_30 AAA_17 AAA_24 Sigma54_activat ABC_tran Zeta_toxin AAA_11 AAA_3 AAA_19 DUF815 TsaE ATPase Parvo_NS1 AAA_25 NB-ARC SLFN-g3_helicase bpMoxR PhoH Sigma54_activ_2 Vps4_C Viral_helicase1 MazE_antitoxin
Other DBs
NCBI-ProteinID: BBD00983
LinkDB
Position
1:complement(2397220..2399514)
AA seq 764 aa
MADQEQEGRRIQVANARPEDAGRGLARLPLTVMAQLQLAEGDVVEIVGKRATPARVVRPY
KEDEGLDVLRLDGLQRANAGVGSGDFVQIMKAEPRAAQRVVFAPAQNNLRLQGNPDALKR
VFYQRPLTSGDVVATAGQQQVPPNDMPPQLRQMLAAPAYALQEIRLVVVSTVPKGIVHID
ADTEVELRAEYEEPRESRRADVTYDDVGGMADAIDQLREMVELPLRYPELFTRLGVDPPK
GVLLHGPPGTGKTRLARAVANESDAEFFLINGPEIMGSAYGESEKQLREIFEAAAKAAPS
ILFIDEIDSIAPKRGQVTGETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRR
PGRFDREIIVGVPDERGRREILGIHTRGMPLGDRVDLAELARMTYGFVGADLAALTREAA
IETVRRFMPRLNLEDGTIPPDVLEELSVTREDFLSAIKRVQPSAMREVMVQAPNIGWSDI
GGLDDAQMRLKEGVELPLKDPDAFRRIGIRPAKGFLLYGPPGTGKTLLAKAVAREAQANF
IATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPAVTERV
VNTILAEMDGLEELQSVVVIGATNRPTLIDPALLRPGRFDELIYVPVPDEAGRRRILGIH
TAKMPLADDVDLDRLARETERFTGADLEDLVRRAGLFALRQSLSVDKVTQAHFESGLEDT
RASVTPEMEREYEQIQAQLKQRAMQVDPIGFIAPGMVRSRDRSD
NT seq 2295 nt   +upstreamnt  +downstreamnt
gtggctgatcaggaacaggaaggacgccggattcaggtcgccaatgcgcggccggaggat
gcgggccgcggtttggcgcgcttgccgctgaccgtcatggcgcaattgcagctggccgaa
ggcgatgtggtcgagatcgtcggcaagcgcgcgacgcccgcacgggtggtgcgcccatat
aaggaggatgaagggctggacgtgcttcgcctcgacgggttgcagcgcgccaatgccggg
gtggggtcgggcgacttcgtccagatcatgaaggcggaaccgcgtgccgcgcagcgggtc
gtgttcgcacctgcacaaaataatctacgactacagggcaaccccgatgcgttgaagcgg
gtcttctaccaacggccgctgacgtccggcgatgtcgtcgcgacggccgggcagcagcag
gtgccccccaacgacatgccgccgcaactgcgccagatgctggcggcgccggcctatgcc
ttgcaggaaatccggctggtcgtcgtgtccaccgtgcccaagggcatcgtccatatcgac
gcggacaccgaagtggagctgcgcgccgaatatgaggagccgcgcgaatcgcgccgcgcc
gatgtgacctatgatgatgtcggcggcatggccgatgcgatcgaccagctgcgcgagatg
gtggagttgccgctgcgctatcccgaactcttcacgcggctgggcgtcgatccgcccaag
ggcgtgttgctgcatggcccgccgggcacgggcaagacgcgcctcgctcgcgcggtcgcc
aatgaatcggacgcggaatttttcctgatcaacggtcccgaaatcatgggatcggcctat
ggcgagtcggaaaagcagctgcgcgagatattcgaggcggcggcgaaagcggcaccctcg
atcctgttcatcgacgagatcgattcgattgcgcccaagcgaggccaagtgactggcgag
acggaaaagcggctcgtcgcgcaactgctgacgctgatggatgggctggagccgcgcacc
aatctggtcgtcatcgctgccaccaaccggcccgaagcgatcgacgaagcgctgcggcgg
cccggccgcttcgaccgcgagatcatcgtcggcgtccccgacgagcgcggccggcgtgag
atattgggcatccatacgcgcggaatgccgctgggcgaccgggtcgacctcgccgaactg
gcgcgcatgacctatggctttgttggtgcggaccttgccgcgctgacccgtgaggccgcg
atcgagacggtacgccgcttcatgccgcgcctcaatctggaagacggcacgatcccgccc
gacgtgctggaggagctgtctgtcacgcgggaggatttcctttcagcgatcaagcgcgtc
cagccgtccgctatgcgcgaagtgatggtgcaggcgcccaatatcggctggtccgatatc
ggggggctggacgacgcgcagatgcggttgaaggaaggggtcgagctgccgctgaaagac
cccgatgctttccgccgcatcggcattcgcccggccaagggcttcctgctctacggcccg
cccggcaccggcaagaccttgctggccaaggcggtggcgcgcgaagcgcaggccaatttc
atcgcgaccaaatcgagcgatctcctgtccaaatggtatggggaaagcgagcagcagatc
gcgcgcctcttcgcccgcgcgcggcaggtggcgcccacggtcatcttcatcgacgaactg
gacagtctggtccccgcgcgcggcggggggcttggcgagccggcggtgacggagcgggtg
gtgaacacgatcctcgccgaaatggacgggctggaggagttgcagtcggtggtcgtcatc
ggcgccaccaaccgcccgacgttgatcgatccggcgctgctgcgacctgggcggttcgat
gagctgatctatgtgccggtgcccgacgaagcgggccgccgtcgcatattgggcatccat
acggccaagatgccgctggccgacgatgtcgatctggatcggctggcgcgggagacggag
cgcttcaccggcgccgatctggaagacctcgtccgccgcgccggcctgttcgcgctgcgc
cagtcgctttcggtcgacaaggtgacgcaggcccatttcgaaagcgggctggaggacaca
cgcgcgtccgtcacgcccgaaatggagcgcgaatatgagcagatccaggcacaattgaag
cagcgggcgatgcaggtcgatcccatcggcttcatcgcgccgggcatggtgcgatcgcgc
gatcgcagcgattga

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