Sphingobium sp. YG1: YGS_C1P2375
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Entry
YGS_C1P2375 CDS
T05858
Name
(GenBank) type IV secretion system protein VirD4
Organism
spyg
Sphingobium sp. YG1
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Gene cluster
GFIT
Motif
Pfam:
T4SS-DNA_transf
TraG-D_C
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
BBD01120
UniProt:
A0A2Z6AGT3
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Position
1:2538659..2540668
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AA seq
669 aa
AA seq
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MLIGQILVVFAIVIAGVWAATQWAAAMLAYQPELGLPWFRLGTMPIYHPWALFGWWYHYD
AYAPIVFDKAGMLAGASGFIGCAAAIFGSLWRARQSSNVTTYGSARWASPREIERAGLHR
DAGVMLGTLGGRYLRHDGPEHIMAFAPTRSGKGVGLVVPTLLSWTGSTVVHDIKGENWTL
TAGWRARFSHCLLFNPTDAASAHYNPLLEVRRGIDKVRDVQNIADILVDPEGALERRNHW
EKTSHSLLVGAILHMLYAEEEKTLARVATFLSDPQRSFVATLRRMMTTNHLGDDKNPRVH
PVVASAARELLNKSENERSGVLSTAMSFLGLYRDPTVAEVTSRCDWRIADLIEADQPLSL
YLVIPPSDISRTKPLIRLVLNQIGRRLTERLDQPGTSSRRHQLLMMLDEFPALGRLDFFE
TSLAFMAGYGIRAFLIAQSLNQIEKAYGDHNAILDNCHVRVAFATNDERTAKRISDALGT
ATEQRAMRNYAGHRLAPWLAHVMVSRQETARQLLTPGEVMQLSPDEELVLVSGLAPIRAR
KLRYFRDRNFAARVAPAPVLASGQYADRPKPRGDDWFDQVRGIDARLHQAEDAAGGEDDG
GMQQQRHPGLPEQVSKATDPAETRDPQIVPDDDDVAADKRAMDQAQGQNAIVRGHAINEG
AKRDLIPDF
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
ttgcttatcggccagatccttgtcgtcttcgcaatcgtgatcgcaggggtatgggccgcg
acgcagtgggcggcggcgatgctcgcctaccagcccgaactcggcctgccgtggttccgg
ctcggcactatgccaatctaccatccctgggcgctcttcggctggtggtatcactatgat
gcctatgccccgatcgtcttcgacaaggcgggcatgctcgccggcgccagcggctttatc
ggctgcgcggcagcgatcttcggttcgctgtggcgcgcgcgccagtcgagcaatgtcacc
acctatggttcggcccgctgggcaagcccccgcgagatcgaacgcgccggcctgcatcgc
gacgccggcgtcatgctcggcacgctcggtggacgctatcttcgccatgatggccccgaa
cacatcatggcgttcgcgccgacccgctcgggcaaaggcgttggcctcgtcgttccgacc
ttgctgtcctggaccggatccaccgtcgtccacgatatcaagggcgagaactggacgctg
accgctggctggcgtgcgcgcttctcgcactgcctgctgttcaacccgaccgacgccgcg
tcggcgcattacaatccgctgctcgaagtccggcgcggcatcgacaaggtgcgcgacgtt
cagaacatcgccgacatcctggtcgatcccgaaggcgcgctcgaacgccgcaatcactgg
gaaaagaccagccattcgctgctcgtcggcgcgatcctgcacatgctctatgccgaggag
gaaaagacactggcccgcgtcgcgaccttcctgtccgacccacagcgcagcttcgtcgcc
acgctccgccggatgatgaccaccaatcatctcggcgatgacaagaaccccagagtgcat
ccagttgtcgcctccgccgcgcgcgagctgctcaacaagagtgagaacgagcggtccggc
gtgctgtcaaccgccatgtccttccttggcctctatcgcgatccgaccgtcgccgaggtc
acgtcgcgctgcgactggcggatcgccgacctcatcgaggccgaccaaccgctgtcactc
tatctcgtcatcccaccatcggacattagccgtaccaagccgctgatccgcctcgtgctt
aaccagatcggccgccgtctcaccgagcgactggaccagcccggtacatcatcgcgccgg
caccaactcctgatgatgctcgacgagtttccggcgctggggcgtctcgatttcttcgag
accagccttgccttcatggccggctacggcattcgcgccttcctgatcgcgcagagcctc
aaccagatcgagaaggcgtatggcgatcacaacgctatcctcgacaactgccatgtccgt
gtcgctttcgcgaccaatgacgagcgcaccgccaagcgcatttccgatgcgctcggcacc
gcgaccgagcagcgcgccatgcgcaactatgccgggcaccggctcgcgccctggctggcg
cacgtcatggtcagccgccaggaaaccgcccgccagctcctgacgccgggcgaggtgatg
cagctttcgcccgatgaggagcttgtgctggtgtccggtctcgcgccgatccgggcgcgc
aaattgcgctatttccgcgaccgcaatttcgctgcgcgcgtggcaccggcgccggtgctg
gcatcgggtcaatatgccgatcggccgaagccgcgcggcgacgactggttcgatcaggtg
cgcggcatcgacgcccgcctgcaccaggccgaggatgccgcgggtggcgaggacgatggc
ggcatgcagcaacagcgccatcccggccttcccgaacaggtctccaaggcaaccgacccc
gccgaaacgcgcgatccccagatcgtgcccgacgacgatgatgtcgccgccgacaagcgc
gccatggaccaggcgcaagggcagaacgccatcgtgcggggccatgccatcaacgagggc
gcgaagcgcgacctcataccggacttttga
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