Sphingobium sp. YG1: YGS_C1P2560
Help
Entry
YGS_C1P2560 CDS
T05858
Name
(GenBank) DNA mismatch repair protein MutS
KO
K03555
DNA mismatch repair protein MutS
Organism
spyg
Sphingobium sp. YG1
Pathway
spyg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
YGS_C1P2560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spyg03400
]
YGS_C1P2560
DNA repair and recombination proteins [BR:
spyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
YGS_C1P2560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-ProteinID:
BBD01305
LinkDB
All DBs
Position
1:2712402..2715059
Genome browser
AA seq
885 aa
AA seq
DB search
MASSTDNPASAAAPTPMMAQYLTLKAEAQDCLLFYRMGDFFELFFDDAKMAAATLDIALT
SRGEHGGQPIPMCGVPVHSAEGYLARLIKGGHRVAIAEQTETPAQAKARGGKTLVARAIV
RYVTAGTLTEETLLDSRRDNMLVALAQVGGEGSGEIGIAAADISTGRFETMTCPFADLPA
ELARLRPSEVVVAEGSGIEVADMHPFDKTAFSSSRAEDALKRLFGVATLDGFGQFGRAEL
AAMGGLIAYLDHAGKGTLPFLAPPLRKTSGGHVAIDAATRESLEIVSTTAGTRAGSLLGA
IDRTVTGAGARLLGQDLSAPLMDLAVIEARLGLVTLFHDDATLRDQLRGALRALPDIGRA
LGRVAVGRGSPRDLGQLRDGLGGARLLRERLGRLGDAPQMLVQLLPALDGHGALVDALSR
ALVPAPPTETASGGYIADGYDPALDELRRLSSDGRRAIAALEAKYRAQTGISALKIRHNG
VLGYHVEVPARAADALMAPDSGFTHRQTLAGVVRFNSIDLHEEAGRVAQAGAHALVAEAA
HLEELIGAVLDRKADIARAADALARLDVAASLAERAAEGGWQRPHFVAADGAGQCLDIVG
GRHPVVEDALRKDGQPFVANDCRLNEGDRLWLVTGPNMGGKSTFLRQNALIVILAQAGGY
VPAQAATLTLVDRLFSRVGASDNLAKGRSTFMVEMVETAAILAQATERSFVILDEVGRGT
STYDGLALAWAVVEAVHEVNRCRCLFATHYHELTRLAETLLSLSLHHVRAREWKGDLILL
HELAEGPADRSYGLAVARLAGLPPAVLKRAKDVLARLEAGKAKTGGIAAGLDDLPLFAAV
ATQEEAAPDPLLAAIAAIDADALSPREALDHIYRLKQLAADMRHD
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcgaccgacaatccagcttctgccgccgccccgacgccgatgatggcgcaa
tatctgacgctcaaggcggaggcgcaggactgcctgctcttctaccgcatgggcgatttt
ttcgagctgttcttcgacgatgcgaagatggcggcggcgacgctggatatcgcgctgacc
agtcggggcgaacatggcggccagcccattccgatgtgcggcgtgccggtgcatagcgca
gaaggctatctggcgcggctgatcaagggcggacatcgcgtcgccatcgccgagcagacc
gaaacgccggcgcaggccaaggcgcgcggcggcaagacgttggtggcgcgcgcgatcgtg
cgttatgtgaccgccggcacgctgaccgaggagactctgctcgacagccggcgcgacaat
atgctggtggcgctggcgcaggtcggcggggaaggatcgggcgagatcggtatcgccgcc
gccgatatttccaccggccggttcgaaacgatgacctgcccgtttgccgacctgcccgcc
gagctggcgcggttgcggccgagcgaagtggtggtggccgagggatcaggcatcgaggtg
gcggacatgcacccgttcgacaagaccgccttttccagcagccgggccgaagatgcgctg
aaacgcctgttcggggtggcgacactggacggattcggccagttcggccgggccgagctg
gcggcgatgggcgggttgatcgcctatctggaccatgcgggcaagggcacgctgcccttc
ctggcgccgccgctgcgcaagaccagtggcggccatgtcgcgatcgacgcggcgacacgc
gagagtctggaaatcgtgtcgaccacggcgggcacgcgggcgggcagcctgctgggcgcg
atcgaccggacggtgacgggcgcgggcgcccggctgttggggcaggatctgtcggcgccg
ctgatggacctggcggtcatcgaagcgcggctggggctggtcacgctgttccatgacgat
gcgacgttgcgcgaccagttgcgcggggcgctgcgggccttgcccgatatcggccgggcg
ctggggcgcgtggcggtggggcgtggcagcccgcgcgatctgggtcagttgcgcgatggc
cttggcggcgcgcggttgctgcgcgagcggctggggcggctgggcgatgcgccgcagatg
ctggtgcagttattgccggcgctggacgggcatggcgcgctggtcgatgcgctgtcgcgc
gcgctggtgcccgctccgccgaccgagacggcgagcggcggctatatcgccgacggttac
gatccggcgctggacgaattgcggcggctgagcagtgacggccgccgggcgatcgcggcg
ctggaggccaaatatcgcgcgcagaccgggatttccgcgctcaagatccggcataatggc
gtgctgggataccatgtcgaagtgccggcccgtgccgccgatgcgctgatggcgcccgac
agcggctttacccatcgccagacgttggcgggcgtggtgcgattcaactcgatcgacctg
catgaggaagccggacgcgtggcgcaggccggtgcccatgcgctggtggccgaggcggcg
catctggaggaactgatcggcgcggtgctggatcgcaaggccgacatcgcccgcgccgcc
gatgcgctggcacggctggacgtggcggcttcgctcgccgagcgggcggccgagggcgga
tggcagcggccgcattttgttgcggcagatggcgcgggccagtgcctcgacatcgtgggc
ggacggcatccggtggtcgaggatgcgctgcgcaaggacgggcagcctttcgtcgccaat
gattgccgattgaacgagggcgaccggctgtggctggtcaccgggccgaacatgggcggt
aagtcgaccttcctgcgccaaaatgcgctgatcgtcatattggcgcaggctggcggctat
gtgccggcgcaggccgcgacgttgactctggttgatcggctgttcagccgggtcggcgcg
tcggacaacctcgccaaggggcgatcgaccttcatggtcgagatggtcgagacagcggcg
atcctggcgcaagccacagagcgtagcttcgtcatattggacgaggtgggccgtggcaca
tccacctatgatggcctcgcgctcgcatgggccgtggtggaggcggtgcatgaggtcaat
cgctgccgctgcctgttcgccacacattatcatgagttgacgcggctggccgagacgctg
ttgtcgttgtcgctgcaccatgtccgcgcgcgcgagtggaagggcgacctcatattgctg
cacgaactggccgaggggccagccgatcgcagctacggcctggccgtcgcacggctggcg
gggttgccaccggccgtgctgaagcgcgccaaggatgtgctggcgcggctggaggcgggc
aaggcgaagaccggcgggatcgcggcggggctggacgacctgcccttgttcgcggcggtg
gcgacgcaggaggaggcagcgcccgatccgctgctggcggcgatcgcggcgatcgacgcc
gacgctttgtccccgcgtgaagcactcgatcatatatatcgactgaaacaactggccgcc
gacatgcggcacgactag
DBGET
integrated database retrieval system
