Sphingobium sp. YG1: YGS_C1P3011
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Entry
YGS_C1P3011 CDS
T05858
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spyg
Sphingobium sp. YG1
Pathway
spyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YGS_C1P3011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spyg03019
]
YGS_C1P3011
03400 DNA repair and recombination proteins [BR:
spyg03400
]
YGS_C1P3011
Enzymes [BR:
spyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YGS_C1P3011
Messenger RNA biogenesis [BR:
spyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YGS_C1P3011
DNA repair and recombination proteins [BR:
spyg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
YGS_C1P3011
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
BBD01756
UniProt:
A0A2Z6AIF1
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All DBs
Position
1:3216605..3218380
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AA seq
591 aa
AA seq
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MARDIPTLLHDIFGFTAFRGVQEQVVGRVMAGRPTLAIMPTGAGKSLCYQLPSAALDGCC
IVVSPLIALMHDQLRAANAVGLRAASLTSVDADWRETQDRLRNGDLDLLYVAPERASQEN
FRNLLRATKIALFAIDEAHCVSEWGHDFRPDYRLLRPLLDEFPDVPRLALTATADAHTRE
DILVQLGIPRDGLIISGFDRPNIRYAVHPRDGLTRQLADLVAANPGPGVVYAQTRAATEK
LAETLGRGGRAVRAYHAGMEPAVRAANQAAFIASEDMVMVATVAFGMGIDKPDVRFVAHA
GLPKSIEGYYQESGRAGRDGEPAVAHLFWGAEDFARARMRIAELEPARQPGERTRIAALG
ALVETATCRRAILLRHFGEHPPATCGNCDNCLTPPASVDATETARKYLSAVYRTGQSFGA
GHIEAVLTGTPNDKIRERGHDRISVHGIVAGEEVALLRPVSRALLVRDALETTEHGGLML
GPNARPILRGEEEVRILMPPKRERRSKRSARNGADANPVGDPLFDALRACRRELAQEAGV
PPYVIFHDSTLREMAEQRPSSIREMSHISGIGQKKLDAWGDAFLAAIRPFL
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgacatccccacgcttctccacgatattttcggtttcaccgcctttcggggc
gtgcaggaacaggtggtgggccgcgtcatggcggggcggccgacgctggcgatcatgccg
accggcgcgggcaagtcgctctgctatcagctgccttccgccgcgctcgacggctgctgc
atcgtcgtgtcgccgctgatcgcgctgatgcacgaccagttgcgcgccgccaatgcggtg
ggcctgcgcgccgccagcctgaccagcgtggacgccgactggcgcgagacgcaggatcgc
ctgcgcaatggcgatctcgacctgctctatgtcgcgcccgaacgcgccagtcaggaaaat
ttccgcaacctgctgcgcgcgacgaagatcgccctcttcgccatcgacgaagcccattgc
gtgtccgaatggggccatgattttcgccccgactatcgcctgctgcgcccgctgctggac
gaatttcccgatgtcccgcgcctggcgctcaccgccaccgcggacgcgcacacgcgcgag
gatatcctcgtccaactgggcatcccgcgcgacggcctcatcatctccggcttcgaccgg
cccaatatccgctatgccgtccatccgcgcgacggcctgacccgccaactggccgacctc
gtcgccgccaatcccggcccgggcgtcgtctatgcccagacccgcgccgcgaccgagaag
ctggctgaaacgctggggcggggcgggcgggccgtgcgcgcctatcatgccggcatggag
ccagcggtgcgcgccgccaatcaggccgccttcatcgccagcgaagatatggtgatggtc
gccaccgtcgccttcggcatgggcatcgacaagcccgacgtgcgcttcgtcgcccatgcc
ggcctgcccaaatcgatcgagggctattatcaggaatcgggccgcgccggccgcgatggc
gaaccggcggtcgcgcatctcttctggggggcggaggatttcgcccgcgcccgcatgcgc
atcgccgagctggagccggcccgccagccgggcgaacgcacccgcatcgcggcgctgggc
gccctcgtcgaaaccgccacctgccgtcgggcgatcctgctgcgccatttcggcgagcat
ccgcctgccacctgcggcaattgcgacaattgcctgacgcccccggccagcgtcgacgcg
accgagacggcacgcaaatatctgtccgccgtctatcgcaccgggcagagtttcggcgcc
ggccatatcgaggcggttctgaccggcacgcccaacgacaagattcgcgagcgcggccac
gaccgtatctccgtccacggcatcgtcgcgggggaggaggtcgccctgctgcgcccggtg
tcgcgcgcgctgctggtgcgcgatgcgctggaaacgacggaacatggcgggctgatgctc
ggccccaatgcccggccgatcctgcgcggggaggaggaggtgcgcatcctcatgccgccc
aagcgcgagcggcgcagcaagcgcagcgcccgcaatggcgccgatgccaacccggtcggt
gatccgctgttcgacgccctgcgcgcctgccgccgcgaactggcgcaggaggccggcgtg
ccgccctatgtaatcttccacgattcgacgttgcgtgaaatggcggaacagcgtccctcc
tccatccgcgaaatgagccatatcagcggcatcggccagaagaaactggacgcctggggc
gacgccttcctcgccgcgatccggcccttcctttga
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