Sphingobium sp. YG1: YGS_C1P3168
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Entry
YGS_C1P3168 CDS
T05858
Name
(GenBank) RNA polymerase sigma factor for flagellar operon FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
spyg
Sphingobium sp. YG1
Pathway
spyg02020
Two-component system
spyg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spyg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
YGS_C1P3168
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
YGS_C1P3168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spyg03021
]
YGS_C1P3168
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
spyg02035
]
YGS_C1P3168
Transcription machinery [BR:
spyg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
YGS_C1P3168
Bacterial motility proteins [BR:
spyg02035
]
Flagellar system
Flagellar assembly proteins
Stator
YGS_C1P3168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
Sigma70_ECF
HNH_repeat
DUF1492
Motif
Other DBs
NCBI-ProteinID:
BBD01913
LinkDB
All DBs
Position
1:3367589..3368320
Genome browser
AA seq
243 aa
AA seq
DB search
MYMNKISAGAHTYAKPGENSPERLARQYMPLVRKIAWHVHGRVSTAIEVEDLLQIGMVAL
VEAANSFEDRGLGFAAYAQLRVRGAMIDHLRRQATICRSAMAKRKELAKVRNRLEQKLGR
LPTEAEMSTDMGLEPAAYREIADSVEMVQHTSMDEVYSDQSMWFADVEDRADDIMERESL
KKALAGCIGELPQREAMVLQLYFVEEMNLEEIGHTLDIGAARVCQIKKAALDKLREKLRD
WDD
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atgtatatgaacaagatttcggctggcgctcatacatatgccaagcccggtgaaaacagc
ccggagcggctcgcccgccaatatatgccgctggtgcgcaagatcgcctggcatgtccat
ggccgcgtctcgaccgcgatcgaggtggaggatctgcttcagatcggcatggtcgcgctg
gtggaggccgccaacagtttcgaggatcgcggccttggctttgccgcctatgcccagttg
cgcgtacgcggcgcgatgatcgaccatctgcggcggcaggcaacaatttgccggtcggca
atggccaagcggaaagaacttgccaaggtacgcaaccggctggagcagaagcttggccgc
ctgccgaccgaagcggaaatgtccaccgacatggggctggaaccggccgcctatcgcgag
atcgccgacagcgtcgagatggtccagcacaccagcatggacgaagtctattcggaccag
tccatgtggttcgccgatgtggaggaccgtgccgacgacatcatggagcgagagtcgctc
aaaaaggcgctggccggctgcatcggcgaattgccccagcgtgaggcgatggtcctgcaa
ctctatttcgtcgaggaaatgaacctggaggaaatcggtcatacgctggacatcggcgcc
gcgcgcgtctgccagatcaagaaggccgcgctcgacaagctgcgtgagaaactgcgcgac
tgggacgactga
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