Sphingobium sp. YG1: YGS_C1P3241
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Entry
YGS_C1P3241 CDS
T05858
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
spyg
Sphingobium sp. YG1
Pathway
spyg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
YGS_C1P3241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spyg03400
]
YGS_C1P3241
Enzymes [BR:
spyg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
YGS_C1P3241
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
YGS_C1P3241
DNA repair and recombination proteins [BR:
spyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
YGS_C1P3241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
PSMbeta
Motif
Other DBs
NCBI-ProteinID:
BBD01986
UniProt:
A0A2Z6AJ27
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All DBs
Position
1:3434295..3435107
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AA seq
270 aa
AA seq
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MPELPEVETTVAGLRSVLEGSVLTRVEPRRADLRWPIPVDLRQRMTGATVTGLSRRAKYG
LIETDRGDMMIFHLGMSGRWRIDPAEIGAHDHLLLETGKGHVLALNDPRRFGSLDLVRSD
AWQSYTPFTRMGPEPLGPDFDTAYLAGALSGKGTSIKAALLDQRIVAGLGNIYVCEALNM
AGIAPTRAAGKIGRARLALLVEAIRDVLSAAIVAGGSTLRDYARPDGELGYFSKQWRVYG
REGESCLCGGTVLRRVDGGRSTFFCPKCQK
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcttcccgaagtcgaaacaaccgtcgccggcctgcgctccgtgctggagggc
agcgtcctgacccgtgtggagccgcgccgcgccgacctgcgctggccgattcccgtcgac
ctgcgccagcggatgaccggcgccacggtgacgggcctgtcgcgccgcgccaaatatggc
ctcattgaaaccgatcgcggcgacatgatgatctttcacctcggcatgtcggggcgctgg
cgaatcgatccggcggagatcggcgcgcatgaccatctgctgttggaaacaggaaaaggc
catgtcctcgcgctcaacgacccgcgccgattcggatcgctcgatctggtgcggtcggac
gcgtggcaaagctatacgcccttcactcgcatggggcccgagccgctgggaccggatttc
gataccgcctatctggccggcgcgctcagcggcaaggggacgtcgatcaaggcggcgctg
ctcgatcagcggatcgtggcgggcctgggcaatatctatgtgtgcgaagcgctcaacatg
gccggcatcgcgccgactcgggcggcgggcaagatcggccgggcgcgactcgcgctgctg
gtggaggcgattcgcgatgtcctgtcggccgccatcgtcgcgggcggttccaccctgcgc
gattatgcgcggccggacggagagctaggctatttctccaaacaatggcgcgtctatggg
cgggaaggcgaatcctgcctgtgcggcggcaccgtcctgcgccgggtcgatggcggccga
tcgaccttcttctgcccaaaatgtcagaaatag
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