KEGG   Sphingobium sp. YG1: YGS_C2P1397
Entry
YGS_C2P1397       CDS       T05858                                 
Name
(GenBank) tRNA(fMet)-specific endonuclease VapC
  KO
K18828  tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
Organism
spyg  Sphingobium sp. YG1
Brite
KEGG Orthology (KO) [BR:spyg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:spyg03016]
    YGS_C2P1397
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:spyg02048]
    YGS_C2P1397
Transfer RNA biogenesis [BR:spyg03016]
 Prokaryotic type
  tRNA degradation factors
   YGS_C2P1397
Prokaryotic defense system [BR:spyg02048]
 Toxin-antitoxin system (TA system)
  Type II TA system
   VapC-VapB
    YGS_C2P1397
SSDB
Motif
Pfam: PIN
Other DBs
NCBI-ProteinID: BBD03383
UniProt: A0A2Z6AMY2
LinkDB
Position
2:complement(1741122..1741529)
AA seq 135 aa
MSAPRYMLDTNIVSDLVRHPQGAIYEKIVEIGADAVCVSIITAAELRYGCAKKGSARLLA
QVEAILEGIEVLPFDMPADAEYGGIRAELEAAGQPIGPNDLLIAAHCYTLGFTLVTANDR
EFRRIRALPVENWIH
NT seq 408 nt   +upstreamnt  +downstreamnt
ttgagcgcaccgcgttacatgctcgataccaacatcgtgtccgatctcgtgcgacatccg
cagggcgcgatttatgaaaagatcgtcgagatcggagcggatgcggtctgcgtgagtatc
atcaccgccgccgaactacgctatggatgcgccaagaagggttctgcaaggctgctcgcc
caggtggaagccattctcgagggtatcgaggttctgccctttgatatgcctgccgacgct
gaatatggtggaatccgggcagagctggaggcagcagggcagccgatcggtccgaacgat
cttctgatcgcggcgcactgctatacgctcggcttcaccctggtcacagcaaatgatcgg
gagtttcgccgtatacgcgcgcttcccgtggagaactggatccactga

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