Stakelama tenebrarum: G5C33_08145
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Entry
G5C33_08145 CDS
T06464
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spzr
Stakelama tenebrarum
Pathway
spzr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spzr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G5C33_08145 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spzr03021
]
G5C33_08145 (rpoC)
03400 DNA repair and recombination proteins [BR:
spzr03400
]
G5C33_08145 (rpoC)
Enzymes [BR:
spzr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G5C33_08145 (rpoC)
Transcription machinery [BR:
spzr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G5C33_08145 (rpoC)
DNA repair and recombination proteins [BR:
spzr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G5C33_08145 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QIG79763
UniProt:
A0A6G6Y592
LinkDB
All DBs
Position
complement(1659877..1664163)
Genome browser
AA seq
1428 aa
AA seq
DB search
MNELTNFANPVAKPETFDQIQIGIASPDRIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKVMLMDLDLEGEREDLLKELAETKSELKPKKIIKRLKVVESFIESGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QESVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMEKENEPGEGMILGDMEEVHQALFN
GAVTLHTKITTRVPQTDEEGNEYMQRVETTPGRMLIGEKLPKSHRVPFETINRLLTKKEI
GDVIDTVYRHTGQKETVLFADGIMTLGFQHAFRAGISFGMDDMIIPAAKEGLVEETRALV
KDYEQQYQDGLITQQEKYNKVIDAWSRCGDQVAGAMMDEIKAVKKFEDGPDAGREKPINS
IYMMAHSGARGSQAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARK
GLADTALKTANSGYLTRRLVDVSQDCVIMEDDCGTERALEMKAIVQGGSTIASLGERILG
RTTAEDVVDSKTGEVVIPSGTLLDEAMVAQIEAVGVQGMKIRSPLVCEAKIGVCGKCYGR
DLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAPVDGKVEFRD
VRMIMDQRGRRVVLSRSAELAILDTEGRELAVHKIPYGAHVLFDDGHIVTAGDRMAEWDP
FTAPVITENPGTVKYQDLIDGKTLTEQADEATGITQRVVTDYRGSARSKEDLRPRLTLTG
DSAEEAGRYMLQPGAVISVEDGATVQAGDVLARVARESAKTRDITGGLPRVAELFEARKP
KENAIIAKVSGRVVFGKDYKAKRKIGIQPEDGGDVVEYLVPKSKVIDVQEGDYVKRGDNL
IGGSPDPHDILEVLGIEALAEYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITEAG
DTTLLPGEQVDRDEMDKTNAKLAPGQMPAQGKPVLLGITKASLQTRSFISAASFQETTRV
LTEAAVQGKQDTLIGLKENVIVGRLIPAGTGAGMNRMRIAASSRDAALRAQQRKLQEALI
APESAAAEHEAELAQDPNDARVTSDALEKVETSGHGTDEDAGDYLNKE
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaatttcgcgaacccggtggccaagccggaaaccttcgaccagatc
cagatcggcatcgcgtcgcctgaccgcatccgttcctggtcgttcggcgagatcaagaag
cccgagacgatcaactatcgcacgttcaagccggaacgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattacgaatgcctgtgcggcaagtacaagcgcatgaagtat
aagggcatcgtctgcgaaaaatgcggtgtcgaagtcaccgtgtcgaaggtccgccgcgaa
cgcatgggccatatcgaactcgcagcgcctgtcgcgcacatctggtttttgaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgcgtgctgtat
tttgaaagctacatcgtcaccgagcccggcctgaccccgctcgaaaagttccagctcctc
accgaggacgaactgctcgacgcgcaggacgaatatggtgaagacgccttctccgccggc
atcggcgccgaggcggtcaaggtcatgctcatggacctcgacctcgaaggcgagcgtgag
gacctgctcaaggaactggccgagaccaagtccgagctgaagcccaagaagatcatcaag
cggctcaaggtcgtcgaaagcttcatcgaatcgggcaatcgccccgaatggatgatcctc
gaagtcgtgccggtcattccgcccgaactgcgcccgctcgtcccgctggacggtggccgt
ttcgcgacgtcggacctcaacgacctctatcgccgcgtgatcaaccgcaacaaccgcctc
aagcggctgatggagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaatcggtcgacgcactgttcgacaatggccgtcgcggccgcaccatcaccggtgcc
aacaagcgtccgctcaagtcgctgtcagacatgctcaagggcaagcagggccgcttccgt
cagaaccttctgggtaagcgcgtcgactattcgggccgttcggtcatcgtgaccggcccc
gagctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccgtctcgatgccaagggtctctccatgaccctcaagcaggcgaagaaa
tgggtcgagaaggaacgcaaggaagtctgggatatcctcgacgaagtcattcgcgagcac
ccggtgctgctgaaccgcgccccgacgcttcaccgcctcggcatccaggcgttcgagccg
gtgctgatcgaaggcaaggcgatccagctccacccgctcgtctgttcggcgttcaacgcc
gatttcgacggcgaccagatggccgtccacgttccgctgagcctcgaggcgcagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctgggtctctattacctctcgatggagaaggagaac
gagcccggcgaaggcatgatcctgggcgatatggaggaagtccatcaggcgctgttcaac
ggcgcggtgacgcttcacaccaagatcaccacccgcgtcccgcagacggacgaggaaggc
aatgagtatatgcagcgcgtcgaaacgacgccgggtcgtatgctgatcggtgaaaagctg
cccaaatcgcaccgcgtgccgttcgaaacgatcaaccgccttctcaccaagaaggaaatc
ggcgacgtcatcgacactgtctatcgccacaccggccagaaggagacggtgctgttcgcc
gacggcatcatgacgctgggcttccagcacgcgttccgcgccggcatttcgttcggcatg
gacgacatgatcatccccgccgcgaaggaagggctggtcgaggaaacccgcgcgctggtg
aaggattacgagcagcagtatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgaccaggtggccggcgcgatgatggacgagatc
aaggcggtcaagaagttcgaggatggccccgatgccggccgcgaaaagccgatcaactcg
atctacatgatggcgcattcgggtgcccgtggttcgcaggcgcagatcaagcagcttgcc
ggcatgcgtggcctgatggccaagccgtcgggcgagatcatcgaaaccccgatcatctcg
aacttcaaggaaggcctgaccgttcttgaatatttcaactccacccacggcgcgcgtaag
ggcctggcggacacggcgttgaaaaccgcgaactcgggctatctcacgcgtcgtctggtc
gacgtgtcgcaggactgcgtcatcatggaagatgattgcggcaccgaacgcgcgctggaa
atgaaggcgattgttcagggcggcagcaccatcgcctcgctcggcgagcgtatcctgggc
cgcaccacggctgaggatgtggtcgacagcaagaccggcgaagtggtgatcccgtcgggc
acgttgctcgacgaagcgatggtcgcgcagatcgaggccgttggcgttcagggcatgaag
atccgctcgccgctggtctgcgaagccaagatcggcgtgtgcggcaaatgctatggccgt
gacctcgcccgcggtacgccggtgaatatcggcgaagcggtcggcgtcatcgcggcgcag
tcgatcggggaaccgggcacgcagctgaccatgcgtaccttccacatcggcggcgcggcg
cagctcaacgagcagtcgaacctcgaagcccctgtcgacggcaaggtcgaattccgcgac
gtgcgcatgatcatggatcagcgcggccgccgcgtggttctgtcgcgctcggcagagctg
gcgatcctcgacaccgagggccgcgagctggcggtgcacaagattccgtacggtgcgcat
gtgctgttcgacgatggtcacatcgtgaccgccggcgaccgcatggccgaatgggatccg
ttcactgcgcctgtgatcacggaaaatccgggtacggtgaagtatcaggacctgatcgac
ggcaagacgctgaccgagcaggccgacgaagcgacgggcatcacccagcgcgtcgtcacc
gattaccgtggttccgcccgcagcaaggaagacctgcgtccgcgcctcaccctgacgggc
gacagcgcggaagaagccggccgctacatgctgcagccgggcgcggtgatcagcgtcgag
gatggtgcgacggtccaggccggtgacgtgcttgcccgtgttgcccgcgagtccgcaaag
acccgcgacatcaccggcggtctgccgcgcgtcgccgagctgttcgaagcgcgcaagccc
aaggaaaacgcgatcatcgcgaaggtctcgggccgcgtcgtgttcggcaaggactataag
gccaagcgcaagatcggcatccagccggaggacggcggcgacgtcgtcgaatatctggtg
ccgaagtcgaaggtgatcgacgttcaggaaggcgactatgtcaagcgtggcgacaacctg
atcggcggcagccccgatccgcacgacattctggaagtcctcggcatcgaggcactggcc
gaatatctggtcagcgaaatccaggaagtctatcgactgcagggcgtgaagatcaacgac
aagcacatcgaggtgatcgttcgccagatgctgcaaaaggtcgagatcaccgaagccggc
gacaccacgctgcttccgggcgagcaggtcgatcgcgacgaaatggacaaaaccaacgcc
aagctggctccgggccagatgccggcacagggcaagcccgtgctgctcggcatcaccaag
gcttcgctgcagacgcgttcgttcatctcggcggcgtcgttccaggaaaccacgcgcgtc
ctcaccgaggccgcggtgcagggcaagcaggacacgctgatcggcctcaaggagaatgtc
atcgtcggccgcctcatcccggcgggtaccggcgcgggcatgaaccgcatgcgcatcgcc
gcatcgtcgcgcgacgcggcgctgcgcgcccagcagcgcaagctgcaggaagcgctgatc
gcgcccgaaagcgcggcggccgagcacgaagccgaactggcgcaggatccgaacgacgcg
cgcgtcacttcggatgcgctggaaaaggtggaaacctccggtcacggcaccgacgaagac
gcgggcgattacctcaacaaggaataa
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integrated database retrieval system
