Stakelama tenebrarum: G5C33_10340
Help
Entry
G5C33_10340 CDS
T06464
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spzr
Stakelama tenebrarum
Pathway
spzr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spzr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G5C33_10340 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spzr03400
]
G5C33_10340 (mfd)
Enzymes [BR:
spzr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G5C33_10340 (mfd)
DNA repair and recombination proteins [BR:
spzr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G5C33_10340 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
Helicase_C
UvrB_inter
DEAD
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
SecA_DEAD
RecG_dom3_C
AAA_30
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QIG80139
UniProt:
A0A6G6Y5G4
LinkDB
All DBs
Position
complement(2067082..2070537)
Genome browser
AA seq
1151 aa
AA seq
DB search
MPDLQKILSATQPLTLSGVPTGFLPWLLADLARAGQTAVYIAPDEAAMRAVASTAPYFAP
DLEIIGYPAWDCLPYDRASPTLRVMSERLAALHTLQQPAKKPRLIVTTVNAATQRTLTRF
RVRQLVAKLAPDERISLDRLSALLQSNGYVRVDTVNDAGEFAVRGGLVDLFPSGSEQALR
LDFFGDEIESVRTFDPSDQRTTGRIDGFTLLPASEALLDEDSIKRFRSRYRELFGATATG
DPVYQAVSDGRRLAGMEHWLPLFEEKLETLFDHLPDNAAIIRDANAAGAAEARFDAVADY
HANRLRAQSNDPGSYRPLKQEALYLLTDQWAAALEAAPAHLVSPFHEPESDTVLDFGVDG
PRDFAPERGSGANVYEAVVGHLKDLRKQGRKPVLASYSVGARERLAGLLADHGLSGAQQA
DGWQEALGVAAKGVALTVLPLDHGFTSPDIAVLTEQDMLGDRLIRRRKRRKSADAFLSEL
ATLSPGDLVVHADHGIGRYEGLTSIPVGQSPHDCVALTYAGGDKLYVPVENLEVLSRYGS
SEEGAQLDKLGGEAWQRRKSRMKERIREIAGELIATAAQRALRQADVAEPDHSGYPTFVD
RFPYEETDDQDRAIEEVLGDLGQGKPMDRLVVGDVGFGKTEVALRAAFVAAMAGMQVAVV
CPTTLLARQHYQNFSQRFEGFPIRIGRLSRLVPAAEAKATKDGLADGTVDVIIGTHALLA
KGVDFKRLGLVIVDEEQRFGVTHKERLKGMKADVHVLTLTATPIPRTLQMAMSGIRELSV
IQTPPVDRLAVRTYVMPWDPVVLREALLREHYRGGQAYFVTPRIADLPDIEAFLREEVPE
IKYVVAHGQMSPSEVEERMSAFYDKRYDVLVSTTIVESGLDIPSANTMIINRADRFGLAQ
LYQLRGRVGRSKTRAYAYFTTAPERMMTEAAEKRLKVLSDLDSLGAGFQLASHDLDIRGA
GNLLGDEQSGHIKEVGYELYQSMLEEAILDAKADGIASDRPRDFSPQITVDAPILIPEEY
VPDLDLRMGLYRRLNEVEDKGGIEAFAAEMIDRFGKLPEPTENLLTLVEAKLNAKRACIA
KIDVGPKGALVSFHEDKFPNVEGLLAYVGKLEGTAKLRPDMKLVISRGWATPKARLNGAL
QLSRGLAKAAG
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaccttcagaagatcctctccgccacgcagccgctgacgctcagcggcgttccg
accggatttctcccctggctgctcgccgatctggcgcgcgcggggcagacggccgtctat
atcgcgcccgacgaagcggcgatgcgcgcggtggcgagcacggcgccctatttcgcgccc
gatctggaaatcatcggttatccggcatgggactgtcttccctatgaccgcgcctccccg
accttgcgcgtcatgtccgagcggctggcggcgctgcacacgctgcagcagcccgcgaag
aagccgcgcctcatcgtcaccaccgtcaacgccgcgacgcagcggacgctgacgcggttt
cgcgtgcggcaactggtggcgaagctcgcccccgacgagcgcatctcgctcgaccggctt
tcggcgctgctgcaatcgaacggctatgtccgcgtcgataccgtcaacgacgcgggcgaa
ttcgcggtgcgcggcgggctggtcgacttgttcccgagcggttcggagcaagcgctccgg
ctcgatttcttcggcgacgagatcgaaagcgtgcgcaccttcgatccgtcggatcagcgc
accacgggccgcatcgacggcttcaccctcctccccgcctccgaagcgctgctcgacgag
gacagcatcaagcggttccgcagccgctatcgcgagctgttcggcgcgaccgcgaccggc
gacccggtctatcaggcggtgtcggacgggcgacggctggcggggatggagcattggctg
ccgctgttcgaggaaaagctcgaaactttgttcgatcacttgcccgacaatgccgcgatc
atacgcgacgccaatgcggcgggcgcggccgaggcgcggttcgacgcagtcgccgattat
cacgccaatcgcctgcgcgcgcagtcgaacgatccgggcagctatcggcccctgaagcag
gaagcgctctatctgctgaccgaccaatgggcggcggcgctggaggccgcgcccgcgcat
ctcgtcagcccattccacgagcccgaaagcgacaccgtgctcgatttcggcgtcgacggg
ccgcgcgatttcgcgcccgagcgcgggtcgggggcgaatgtctatgaagcggtggtcggg
catctcaaggatctgcgcaagcagggccgcaagcccgtcctcgccagctattcggtcggc
gcgcgcgagcggcttgccgggctgctcgccgatcacgggctgagcggcgcgcaacaggcc
gatggctggcaggaggctctgggcgtcgccgccaagggcgtcgcgctcaccgtgctgccg
ctcgatcacggctttaccagccccgatatcgccgtcctcaccgaacaggacatgctcgga
gaccggctgatccggcggcgcaagcggcgcaaatcggccgatgcgttcctcagcgagctg
gcgacgctctcgcccggcgatctggtggtgcacgccgatcacggcatcggccgctatgaa
gggctgacttcgatcccggtcgggcagagcccgcatgactgcgtcgcgctgacctatgcc
ggcggcgacaagctctacgtcccggtcgagaatctcgaagtgctgtcgcgctacggctct
tcggaggaaggcgcgcagctcgacaagctgggcggcgaggcatggcagcggcgcaagagc
cgaatgaaggagcgcatccgcgaaatcgcgggtgaactgatcgccactgccgcgcaaagg
gcattgcgccaggccgatgtcgccgagcccgaccattcgggctatccgacctttgtcgac
cgcttcccctatgaggaaaccgacgatcaggaccgcgcgatcgaggaagtgctcggcgat
ctgggccagggcaagccgatggaccggctggtcgtcggcgatgtcggattcggcaagacc
gaagtcgcgttgcgcgccgccttcgtcgcggcgatggcggggatgcaggtggcggtcgtc
tgtcccacgacattgctcgcgcggcagcattatcagaatttcagccagcggttcgaaggt
ttccctatcaggatcggacggctctcgcggctcgttccggccgccgaggcgaaagcgacc
aaggacgggctcgccgacggtacggtcgatgtcatcatcggcacgcatgcgctgctcgcc
aagggagtcgatttcaagcggctggggctggtgatcgtcgacgaggagcagcggttcggc
gtcacccacaaggaacggctcaaaggcatgaaggcggacgtccatgtcctcaccctcacc
gcaacgccgatcccgcgcacgctgcaaatggcgatgagcggcattcgcgagctttcggtg
atccagaccccgccggtcgaccgcctcgcggtgcggacctatgtcatgccctgggacccg
gtggtgctgcgcgaggcgctgctgcgcgaacattatcgcggcggccaggcctatttcgtc
acgccgcgcatcgccgatcttcccgatatcgaggcgttcctgcgcgaggaagtgcccgag
atcaaatatgtcgtcgcgcacggccagatgtcgcccagcgaagtcgaggagcggatgtcg
gccttctacgacaaacgctatgacgtgctggtatcgacgacgatcgtcgaaagcgggctc
gacatcccctcggccaacacgatgatcatcaaccgcgccgatcgcttcggcctcgcccag
ctataccagctgcgcgggcgcgtcgggcggtcgaagacgcgcgcttacgcctatttcacc
accgcgcccgagcggatgatgaccgaggcggcggagaagcggctgaaggtgctctcggac
ctggacagtctcggcgcggggttccagctcgccagccacgatctcgacattcgcggcgcg
ggcaatctgctcggcgacgagcaatcggggcatatcaaggaagtcggctacgaactctat
cagtcgatgctcgaagaggcgatcctcgatgccaaggcggacggcatcgccagcgatcgg
ccgcgcgatttctcgccgcagatcaccgtcgacgcgccgatcctgatccccgaggaatat
gtccccgatctggacctgcgcatggggctctatcgtcgcctgaacgaagtcgaggacaag
gggggaatcgaggccttcgccgccgagatgatcgaccggttcggcaagcttcccgaaccg
accgaaaatctgctgacgctggtcgaggccaagctcaacgccaagcgtgcctgtatcgcc
aagatcgatgtcgggccgaagggcgcgctggtgagcttccacgaggacaaattccccaat
gtcgaggggctgcttgcctatgtcggcaagctggaaggcaccgcgaagctgcgccccgac
atgaagctggtgatttcacgcggttgggcgacgcccaaggcgcggctcaacggcgcgctt
cagctttcgcggggtctcgcaaaggcggcaggctga
DBGET
integrated database retrieval system
