Sphingomonas qomolangmaensis: NMP03_01025
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Entry
NMP03_01025 CDS
T08594
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sqo
Sphingomonas qomolangmaensis
Pathway
sqo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sqo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NMP03_01025 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sqo03021
]
NMP03_01025 (rpoC)
03400 DNA repair and recombination proteins [BR:
sqo03400
]
NMP03_01025 (rpoC)
Enzymes [BR:
sqo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NMP03_01025 (rpoC)
Transcription machinery [BR:
sqo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NMP03_01025 (rpoC)
DNA repair and recombination proteins [BR:
sqo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NMP03_01025 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UUL82856
UniProt:
A0ABY5LA79
LinkDB
All DBs
Position
complement(197120..201400)
Genome browser
AA seq
1426 aa
AA seq
DB search
MNELTNFANPVAKAETFDQIQIGLASPDRIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVIEPGITGLERYQLLTEDELLDAQDQYGEDAFSAG
IGAEAVKQMLIDLDLEGEKRDLLEELAVTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYISMMKENEPGEGMLLGDMSEVHQALNA
GAVTLHTKIISRILQTDEKGETYLKRFETTPGRMLLGECLPQSHKVPFDIVNRLLTKKDV
GDVIDEVYRHTGQKETVLFADAIMSLGFRNAFKAGISFGKDDMIIPDAKVGLVDETRGLV
KDFEQQYQDGLITQQEKYNKVIDAWSRCGDQVATAMMDEIKAVKYYEDGPMKGREKPINS
IYMMAHSGARGSQAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARK
GLADTALKTANSGYLTRRLVDVSQDCVIMELDCGTERALEMRAIVQGGSTIASLGERILG
RTTAEDVVDPKTNAVVIPSGTLLDEPMITQIEAIGILGMKIRSPLVCEAKIGVCGKCYGR
DLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEATSDGKMEYRD
LRIIVDQRGRRVVLSRSGELAIIDMDGRELAVHRIPYGAYVLFDDGHIVSQGDRMAEWDP
FTMPVITENPGTVKYVDLIDGKTLTEQADEATGITQAVVTEYRGKAKEDLRPRLTLLDDN
SGEAGRYMLASGATLSVQDGAQVSGGDVLARVSREAAKTRDITGGLPRVAELFEARKPKE
NAIIAKVSGRVVFGKDYKAKRKIGIQPEDGGEVVEYLVPKSKVIDVQEGDYVKRGDNLIG
GSPDPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDT
TLLAGEQLDRDEMDEANAKLDKNQTPAQGKPILLGITKASLQTRSFISAASFQETTRVLT
EASVQGKIDNLNGLKENVIVGRLIPAGTGAGMNRLRVAASSRDAALRVQQRKLQEVLIAP
NSAAEERAAEKARNARDEAGTGDDPLGKVVTSGTGTDADAGEYLND
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaatttcgccaatccggtcgccaaggccgaaaccttcgaccagatc
cagatcggcctcgcctcgcccgaccgcattcgcagctggtcgttcggtgagatcaagaag
cccgagacgatcaactatcgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattacgagtgcctgtgcggcaagtacaagcgcatgaagtat
aagggcatcgtctgcgaaaagtgcggcgtcgaggttaccgtctcgaaggtccgccgcgag
cggatgggccatatcgagctggccgcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgcgtgctgtat
ttcgagagctatatcgtgattgagccgggcatcaccggcctcgagcgctatcagttgctc
accgaagacgagctgctcgacgcgcaggatcaatatggcgaggacgcattctccgccggg
atcggtgccgaggcggtgaagcagatgctcatcgacctcgaccttgagggcgaaaagcgc
gacctgctcgaagagctggcggtcactaagtccgagctgaagccaaagaagatcatcaag
cggctgaaggtcgtcgaaagcttcatcgattcgggcaatcgtcccgagtggatgatcctc
gacgtcgttccggtcatcccgcccgagcttcgcccgctggtgccgctcgacggtggccgc
ttcgcgacgtcagatctcaacgatctgtatcgccgcgtcatcaaccgcaacaaccgcctg
aagcgcctcatggagctgcgtgcgccggacatcatcgtacgcaacgagaagcgcatgctc
caggaggccgtcgacgccctgttcgacaatggtcgccgcggtcgcacgatcacgggcgcc
aacaagcgtccgctgaagtcactctcggacatgctcaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattcgggtcgttcggtcatcgtgaccgggccg
gaactcaagctgcaccaatgcggcctcccgaagaagatggcgctcgagctgttcaagccg
ttcatctacgcgcgcctcgacgccaagggcctgagcatgacgctcaagcaggcgaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctcgacgaggtgatccgcgagcat
cccgtgatgctgaaccgcgcgcccacgcttcaccgtctgggcatccaggcgttcgagccg
gtattgatcgaggggaaggcgatccagcttcacccgctggtctgctcggccttcaacgcc
gatttcgacggcgatcagatggccgtccacgtcccgctgtcgctcgaagcgcagttggaa
gcacgcgtgctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccgatc
atcgtgccgtcgcaggacatggtcttgggtctctattacatctcgatgatgaaggagaac
gagcccggcgaaggcatgctgctgggcgacatgagcgaggtgcatcaggcgctgaacgcg
ggtgcggtcacgctgcacaccaagatcatcagccgcatcctgcagaccgacgagaagggc
gagacgtatctcaagcgtttcgagacgacgccgggccgcatgctgctgggcgaatgcctg
ccgcagagccacaaggtgccgttcgacatcgtcaaccgcctgctgaccaagaaggacgtc
ggcgacgtgatcgacgaggtctatcgtcacaccggccagaaggagacggtgctgttcgcc
gacgcgatcatgtcgctcggcttccgcaacgccttcaaggcgggcatcagcttcggcaag
gacgacatgatcatccccgacgccaaggtagggctggtcgacgagacccgcggcctggtg
aaggacttcgagcagcaatatcaggacggcctgatcacgcagcaggagaagtacaacaag
gtgatcgacgcctggagccgttgcggtgatcaggtggcgaccgcgatgatggacgagatc
aaggcggtcaaatactacgaagacggcccgatgaagggccgcgagaagccgatcaactcg
atctacatgatggcgcattcgggtgcgcgtggttcgcaggcgcagatcaagcagcttgcc
ggcatgcgcgggctgatggccaagccgtcaggcgagatcatcgaaacgccgatcatctcg
aacttcaaggaaggcctgaccgtccttgagtatttcaactccacccacggcgcgcgtaag
ggcctcgcggacacggcgttgaagaccgcgaactcgggctacctcacccgccgtctggtc
gatgtgtcgcaggattgcgtcatcatggagctcgattgcggtaccgagcgggcgctcgaa
atgcgcgcgatcgtgcaaggcggttcgaccatcgcgtcgctcggcgagcgtatccttggc
cgtaccacggcagaggacgtcgtcgatcccaagaccaacgcggtcgtcatcccttcgggc
acgttgctcgacgagccgatgatcacgcagatcgaagcgatcggcatccttggcatgaag
attcgcagcccgctggtgtgcgaggccaagatcggcgtgtgcggcaaatgctatggccgc
gatcttgcccgtggtaccccggtgaacatcggtgaagctgtcggcgtcatcgccgcgcag
tcgatcggtgagccgggtacccagctgacgatgcgtaccttccacatcggtggcgcagcg
cagctcaacgagcagtcgaacctggaagccacttccgacggcaagatggaatatcgcgac
cttcgcatcatcgtcgatcagcgcggccgccgcgtcgtgctgagccgttcgggcgagctg
gcgatcatcgacatggatggccgcgagctggcggtgcatcgcatcccttatggtgcgtat
gtgctgttcgacgacgggcatatcgtgtcgcagggcgaccggatggccgagtgggacccg
ttcaccatgccggtgatcaccgagaaccccggtacggtgaaatatgtcgatctgatcgac
ggcaagacgctgaccgaacaggccgacgaagccaccggcatcacccaggcggtcgtcacc
gaatatcgcggcaaggccaaggaggatcttcgtcctcgcttgaccctgctcgacgacaat
tcgggcgaggcgggtcgctacatgctggcatcgggtgccacgctgtcggtgcaggacggg
gcgcaggtctcgggcggcgacgttctcgctcgtgtcagccgcgaagctgccaagacgcgc
gacatcaccggtggtctgccgcgcgttgccgagctgttcgaagcgcgcaagcccaaggaa
aatgcgatcatcgccaaggtctcgggccgcgtggtgttcggcaaggactataaggccaag
cgcaagatcggcatccagcccgaggatggcggcgaggtcgtcgagtatctggtgccgaag
tccaaggtcatcgacgtgcaggaaggcgattacgtcaagcgcggcgacaatctgatcggc
ggctcgcccgatccgcacgatattctcgaagtgctcggcatcgagcctctggcggaatat
ctcgtgtcggaaatccaggaggtctatcgtctccagggcgtgaagatcaacgacaagcac
atcgaggtgatcgttcgccagatgctgcagaaggtcgagatcaccgacggcggcgacacc
accctgctcgcgggcgaacagctcgaccgcgacgagatggacgaagccaatgccaagctc
gacaagaaccagaccccggcacagggcaagccgatcctgctcgggatcaccaaggcgtcg
ctgcaaacccgcagcttcatctcggcggcttcgttccaggagacgacgcgcgtcctcacc
gaggcttcggtgcagggcaagatcgacaacctcaacgggttgaaggaaaacgtgatcgtc
ggccggcttatcccggcgggtaccggcgcgggcatgaatcgcctgcgcgtggcggcttcg
tcgcgcgacgcagccctccgcgtccagcagcgcaagctgcaggaagtgctgatcgcgccc
aattcggcggctgaagaacgtgccgccgaaaaggcacgcaatgcccgcgacgaagccggc
accggcgacgatccgctcggcaaggtcgtgaccagcggcaccggcaccgatgccgatgcc
ggcgagtatctgaacgactga
DBGET
integrated database retrieval system
