Sphingomonas qomolangmaensis: NMP03_01600
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Entry
NMP03_01600 CDS
T08594
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sqo
Sphingomonas qomolangmaensis
Brite
KEGG Orthology (KO) [BR:
sqo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sqo03016
]
NMP03_01600
Enzymes [BR:
sqo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NMP03_01600
Transfer RNA biogenesis [BR:
sqo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NMP03_01600
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
BE_C
Motif
Other DBs
NCBI-ProteinID:
UUL82961
LinkDB
All DBs
Position
309053..309673
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AA seq
206 aa
AA seq
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MTVHLHEEDLPAGIFAPGAAIAVDTETMGLITPRDRLCVVQLSDGSGTEHLVRFGPDSDY
AAPNLRAVLGDPDRLKLYHFARFDLAAIRHYLDTVAAPVYCTKIASRLVRTYTDRHGLKE
LVRELLGQELSKAQQSSDWGNPVLTDAQKEYAASDVRYLHAMKAELDRRLAREGRTQLAQ
ACFDFLPHRADLDLAGWPETDIFAHV
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgaccgttcatctccacgaagaagacttgcccgcgggcattttcgcccccggcgccgcg
atcgccgtcgataccgagacgatggggctcatcaccccgcgcgatcggttgtgcgtcgtc
cagctctcggatggctcgggcaccgagcatctggtgcgcttcggccccgacagcgactat
gccgcgcccaatctgcgcgcggtgctgggcgatcccgaccggctgaagctgtatcatttc
gcgcgcttcgatctggcggcgatccgccattatctcgataccgtcgcggcacccgtctat
tgcaccaagatcgcctcgcggctggtgcgcacctataccgatcgccacgggctgaaggag
ctggtgcgcgaattgctcgggcaggaactgtcgaaggcgcagcagtcgtcggactggggc
aatccggtgctgaccgacgcgcagaaggaatatgccgcctccgacgtccgctatctccac
gcgatgaaggccgagctcgatcgccggctggcgcgcgaggggcggacccagctggcgcag
gcgtgcttcgatttcctgccgcatcgcgccgacctcgacctggccggctggcccgaaacc
gacattttcgcgcatgtctga
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