Sphingomonas qomolangmaensis: NMP03_03560
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Entry
NMP03_03560 CDS
T08594
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sqo
Sphingomonas qomolangmaensis
Pathway
sqo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sqo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NMP03_03560 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sqo03021
]
NMP03_03560 (rpoD)
Transcription machinery [BR:
sqo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NMP03_03560 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
UUL83321
UniProt:
A0ABY5LBJ4
LinkDB
All DBs
Position
complement(737074..739101)
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AA seq
675 aa
AA seq
DB search
MAKANMAEVAEGPESGDAPLIDLNEGPIKKLVARAKKRGYITVDQLNEMLPQDQMSSEQI
EDVMSSLNDMGINVVENEEGGEDAEAEEDTPDEVEATDGQDDAAPAFEMVKKKETVDRTD
DPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIFGLCESPITFNAIIGWSTALNEGT
MQLREILDLDAMLSKDPAPESLSEDGEDDGEISAKNAGPTFKEEAEPEEASVDEDDESSE
RRTPRASDDEEEDNTLSLAQMEETLKPQALEKFASITALYKKFSKVQQNRLDAMSAGADF
SAADERKYHKLREELTAEVESVQFHNAKIEYLVDQLYSFNRRLTALGGQMLRLAERHKVN
RKSFLDSYVDHELDENWLASVAKIDKKWKAFAETEVDSVDRIRNEIAEISQATGMALGEF
RRIVNMVQKAEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREP
TPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQA
NLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKL
KHPSRSRKMRSFLDQ
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagcgaacatggcggaagttgccgaaggtcctgaatcgggcgacgcaccgctg
atcgacctgaacgaaggaccgatcaagaaactggtcgcgcgcgccaagaagcgtggctac
atcacggtcgaccagctcaacgagatgctgccacaggaccagatgtcgagcgagcagatc
gaggacgtgatgtcgtcgctcaacgacatgggcatcaacgtggtcgagaacgaagaaggc
ggcgaagacgccgaggccgaagaggatacccccgacgaagtcgaggcgaccgatggccag
gacgatgccgcgcctgcgttcgaaatggtcaagaagaaggagacggtcgatcgcaccgac
gatcccgtccgcatgtacctgcgcgaaatgggcgcggtcgaattgctcagccgcgagggc
gagattgcgatcgccaagcggatcgaggccggccgcgacacgatgatcttcgggctgtgc
gaatcgccgatcaccttcaacgcgatcatcggctggtcgaccgcgctcaacgaaggcacg
atgcagctgcgcgagatcctcgatctcgatgcgatgctctcgaaggaccccgcccccgaa
tcgctgtctgaggacggcgaggacgatggcgagatttcggcgaagaatgccggcccgacc
ttcaaggaagaagccgagcccgaggaagcctcggtcgacgaggacgatgaatcgagcgaa
cgccgcaccccgcgtgcgtcggacgacgaggaagaggacaacaccctcagcctcgcgcag
atggaagagacgctcaagccgcaggcgctcgagaaattcgcctcgatcaccgcgctctac
aagaaattctcgaaggtccagcagaaccggctcgacgcgatgtcggcgggcgccgacttc
tcggcggccgacgagcgaaaatatcacaagctgcgcgaagagctcaccgccgaggtcgag
agcgtccagttccacaacgccaagatcgaatatctggtcgaccagctttacagcttcaac
cgccggctgaccgcgctcggcggccagatgctgcggctggccgagcgccacaaggtcaac
cgcaagtcgttcctcgacagctatgtcgatcacgagctcgacgagaactggctcgcctcg
gtcgcgaagatcgacaagaagtggaaggcgttcgccgaaaccgaggtcgattcggtcgat
cgcatccgcaacgaaattgccgagatttcgcaggcgacgggcatggcgctcggcgagttc
cgccgcatcgtcaacatggtgcagaaggccgagcgcgaagcgcgtatcgccaagaaggaa
atggtcgaggcgaacctacggctggtgatctcaatcgccaagaaatacaccaatcgcggg
ctgcagttcctggatttgatccaggagggcaatatcggcctgatgaaggcggtcgataag
ttcgaatatcgccgtggctacaagttcagcacctatgcgacatggtggatccgccaggcg
atcacccgctcgatcgccgatcaggcccgcacgatccgcatcccggtgcatatgatcgag
acgatcaacaagctggtgcggaccagccgccagttcctccacgagcagggccgcgagccc
acgcccgaggaaatggccgagcgcttgagcatgccgctcgaaaaggtccgcaaggtgatg
aagatcgccaaggagccgatcagcctcgaaaccccgatcggcgacgaggaggatagccac
ctcggcgatttcatcgaggacaagaacgcgatcatcccagtcgatgccgcgatccaggcc
aaccttaaggaaaccgtcacgcgggtgctggcaagcctcaccccgcgcgaggagcgcgtg
ctgcggatgcgtttcggcatcggcatgaacaccgatcacacgttggaagaggtcggccag
caattctcggtgacgcgcgagcgtattcgccagatcgaggccaaggcactgcgcaagctg
aagcaccccagccgcagccgcaagatgcggtcgttcctcgaccaatag
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