Sphingomonas qomolangmaensis: NMP03_04095
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Entry
NMP03_04095 CDS
T08594
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sqo
Sphingomonas qomolangmaensis
Pathway
sqo03030
DNA replication
sqo03430
Mismatch repair
sqo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sqo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NMP03_04095 (dnaE)
03430 Mismatch repair
NMP03_04095 (dnaE)
03440 Homologous recombination
NMP03_04095 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sqo03032
]
NMP03_04095 (dnaE)
03400 DNA repair and recombination proteins [BR:
sqo03400
]
NMP03_04095 (dnaE)
Enzymes [BR:
sqo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NMP03_04095 (dnaE)
DNA replication proteins [BR:
sqo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NMP03_04095 (dnaE)
DNA repair and recombination proteins [BR:
sqo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NMP03_04095 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
UUL83418
UniProt:
A0ABY5LCL3
LinkDB
All DBs
Position
853842..857399
Genome browser
AA seq
1185 aa
AA seq
DB search
MSHSGFVPLRVFSCYTMLDGAIEPKAIAKHARRLKFPAVAMTDRNGLYAAMAFGDACKSE
GVQPIVGTMLSIARPGSPEGRAPIVDWIALYAQDEAGYDNLCALVSEAHLGRPVEWEPHV
QLSALEGRTDGLIALTAGGEGALARLLAEGQDSEAAAYLAALEQLFPDRLYIELTRRGDP
IEIRAEAGLIAFAYDRYLPLVATNPSCFAEADFHAAHDAMLCIASSSYVMSEDRTRSSPE
AWMKPAQEMERQFADLPEALANTLVVAQRCAVAAPYRKPILPSLAGDREGEATKLRDDAR
AGLEARLAKILAIEAAKQEPFASSEVEKPAPDQGFSTALETNGDRFQPYRDRLEFELDVI
VGMGFPGYFLIVADFIKWAKDNGIPVGPGRGSGAGSVVAWALTITDLDPMKLGLLFERFL
NPERVSMPDFDIDFCETRRGEVIRYVQQKYGSDHVAQIITFGKLKARAVLKDTGRVLQMS
YGQVDRLAKLVPNHPTDPWTLERAINGVSEMAHAYEREDDVRRLLDLAKQLEGLPRHSST
HAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLRKGTD
LLAKRGISVDLDTLEWDDAGVYELLQHGDTVGVFQLESEGMRRTLSAVRPSNFGDIIALV
SLYRPGPMDNIPMFGARKNGREPVTYPHPLLEPILNETYGIFVYQEQVMQAAQVLAGYSL
GGADMLRRAMGKKIKAEMDAQRAGFVDGCLSVNGIKAAEANALFDLIDKFAGYGFNKSHA
AAYALLAYQTAWMKAHYPHEFYAASMCFDMGQTDKLAIFVDDMKRLGVTCLGPDVNASEA
EFDVQAHGDGLAVRYALGALKGVGERAMEQIADERRTGGSFASLDDIARRVDPRMLNKRQ
VETLAAAGAFDAIEPNRPGVHAAAETILATAQRVHAGKTSGQGGLFGEGEASEPPIRLPA
KASWSLAERIGAEKDAFGFFFSAHPLDRYAHLAKVHAARPIAALGDVHVPDGARAGATIS
ALIEDARWRTSARGKRYMMLTLSDASATITATCFEESTANALEEASKAGGCGLLQVELDR
RPGEDAARVTVKTVQGFETLSNNAKLVLTLWVDAASALPLLASALRDQRGGRGRVRVMAT
LPDGAEAEVLLGEDFLLDDELVSGLGAIPGVRAVDLMSPKLALAG
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgtcccactccggcttcgtgcccctccgcgtcttttcctgctacaccatgctcgacggg
gcgatcgagcccaaggcgatcgccaagcacgcacgccggctgaaattccccgcggtcgcg
atgaccgatcgcaacgggctgtacgctgcaatggcgttcggcgacgcgtgcaagagcgag
ggcgtccagccgatcgtcggcacgatgctgtcgatcgcgcggccgggcagccccgagggg
cgcgcgccgatcgtcgactggatcgcgctctatgcgcaggacgaagccggctacgacaat
ctgtgcgccttggtgtccgaggcgcatctgggccgcccggtcgaatgggagccgcatgtc
cagctctcggcgctcgaagggcgcaccgacgggctgatcgcgctgactgcgggcggcgag
ggtgcgctcgctcggctactcgccgaggggcaggacagcgaggccgccgcctatctcgcc
gcgctcgaacaactatttcccgaccggctctatatcgagctgacgcggcgcggcgacccg
atcgagatccgcgcggaggccggcctgatcgctttcgcctatgatcgctatctgccgctg
gtcgcgaccaacccttcttgcttcgccgaagccgattttcatgcggcacacgacgcgatg
ctgtgcatcgccagctcgtcctatgtaatgtccgaggaccggacgcgcagctcgcccgag
gcgtggatgaagcccgcgcaggagatggagcggcagttcgccgacctgccagaggcgctg
gcgaacacgctggtcgtcgcgcagcgctgcgcggtggcggcaccctatcgcaagccgatc
ctgcccagccttgccggcgaccgcgaaggcgaggcgacgaagctgcgcgatgatgcgcgc
gcggggttggaagcgcggttggcgaagatcctcgcgatcgaggcggcaaaacaagaaccg
ttcgcttcgagcgaagtcgagaagcccgcgcccgaccagggtttctcgactgcgctcgaa
acgaacggggatcgtttccagccctatcgcgaccggctcgaattcgagctcgacgtcatc
gtcggcatgggttttcccggctatttcctgatcgtcgccgatttcatcaaatgggcgaag
gacaatggcattcccgtcggcccgggccgtggttcgggtgcgggttcggtcgttgcctgg
gcgctgacgatcaccgatctcgacccgatgaagctggggttgctgttcgaacgcttcctg
aacccagagcgcgtgtcgatgcccgacttcgacatcgatttctgcgaaacccgccgcggc
gaggtgatccgctacgtccagcagaaatatggcagcgaccatgtcgcgcagatcatcacc
ttcggtaagctgaaggcacgcgcagtgctcaaggataccgggcgcgtgctccagatgagc
tatggccaggtcgatcgcctcgccaagctggtgcccaaccacccgaccgacccctggaca
ctcgaacgcgcgatcaacggcgtgtccgaaatggcgcatgcctatgagcgcgaggacgat
gttcgccggctgctcgacctggccaagcagctagagggcctgccacgccattcgtcgacc
catgccgccggcgtggtgatcggcgaccggccgctggcgcaactggtgccgctctatcgc
gatccgcgatcggacatgccggtgacccagttcgacatgaaatatgtcgagggtgccggg
ctggtgaagttcgactttctgggcctcaagacactgtcggtgctgcgaaagggaaccgac
ctgctcgccaagcgcgggatcagcgtcgatctcgacacgctcgaatgggatgatgccggg
gtctatgaactgctccagcacggcgacaccgtcggcgtgttccaactcgaatccgaaggg
atgcggcggacgctgtcggccgtgcgcccgtcgaacttcggcgacatcatcgcgctcgtc
tcgctatatcggccaggcccgatggacaatatcccgatgttcggcgcgcgcaaaaacggc
cgcgaacccgtcacctatccgcacccgctgctcgagccgatcctgaacgaaacctacggg
attttcgtctatcaggaacaggtgatgcaggcggcgcaggtgctggcgggctatagcctg
ggcggtgcggacatgctgcggcgcgcgatgggcaagaagatcaaggccgagatggacgcg
cagcgcgcgggtttcgtcgatggctgcctgagcgtcaacggcatcaaggcggcagaggcc
aacgcgctgttcgacttgatcgacaagttcgcgggctatggcttcaacaaatcgcacgcc
gccgcctatgcgctcctcgcctaccagaccgcctggatgaaggcgcattacccgcacgaa
ttctacgcggcgtcgatgtgcttcgacatggggcagaccgacaaattggcgatcttcgtc
gacgacatgaagcggttgggcgttacttgcctaggccccgacgtgaatgcgagcgaggcc
gagttcgacgtgcaggcgcatggcgacgggctggcggtgcgctatgccctcggtgcgctg
aaaggcgtcggcgagcgggcgatggagcagattgccgacgaacgccgcactggcggcagc
ttcgcctcgctcgacgacattgcgcgccgcgtcgatccgcggatgctcaacaagcgccag
gtcgagacgctggcagcggcaggcgcgttcgatgcgatcgaacccaaccgccccggcgtc
cacgctgccgccgagacgatcctggcgaccgcgcagcgggtccatgccggcaagaccagc
gggcagggcgggctgttcggcgagggggaagcgagcgagccgccgatccgcctgcccgcc
aaggcgagctggtcgctcgcagagcggatcggcgcggagaaggacgcattcggtttcttc
ttctcggcgcatccgctcgatcgttacgcccatttggccaaggtccacgccgcgcggccg
atcgcggcgctgggcgacgtgcatgtgcccgatggcgcgcgcgcgggcgcgacgatctcg
gcgctgatcgaggatgcgcgctggcgcacctcggcgcgcggcaagcgctacatgatgctg
acgctgtccgatgcatcggcgacgatcaccgccacctgtttcgaggaatcgaccgccaac
gcgctcgaggaagcgtcgaaggcgggcggatgcgggctgttgcaggtcgagctcgatcga
cgcccgggcgaggatgccgcgcgcgtgacggtgaagaccgtccaggggttcgagacgctg
tcgaacaacgccaagctggtgctgaccttgtgggtcgacgcggcatcggcgctgccgctg
ctggcatcggcgctgcgcgaccagcgcggcgggcgcggacgggtgcgggtgatggcgacg
ctgcccgacggtgccgaggccgaagtgctgctgggcgaggacttcctgctcgacgacgag
ctggtttcagggctgggcgcgatacccggggtgcgcgcggtcgacctgatgagccccaag
ctggcgctcgccggctag
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integrated database retrieval system
