Sphingomonas qomolangmaensis: NMP03_09575
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Entry
NMP03_09575 CDS
T08594
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sqo
Sphingomonas qomolangmaensis
Brite
KEGG Orthology (KO) [BR:
sqo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sqo03032
]
NMP03_09575
03400 DNA repair and recombination proteins [BR:
sqo03400
]
NMP03_09575
Enzymes [BR:
sqo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NMP03_09575
DNA replication proteins [BR:
sqo03032
]
Prokaryotic type
DNA Topoisomerases
NMP03_09575
DNA repair and recombination proteins [BR:
sqo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NMP03_09575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
UUL81463
LinkDB
All DBs
Position
2023139..2024161
Genome browser
AA seq
340 aa
AA seq
DB search
MPDSTIIYHDDSEAGITRKKVRGGWGYWNPAGERIKDRGEIDRLNAIGLPPAYRDAWYCP
SPHGHIQAVGWDEKGRKQYRYHLEFRETQEAAKYARCPAFGLALPKLRKRVERDLRSPKL
SRARAVAAVVRLLDHGHVRIGNEGYAKANKSFGATTLRQHHAKLTGKTLRLQYRAKSGKM
RLMTITDGSLIRFVKRCQDLPGQHLFRWVDQAGETHPVTSSDVNAYIREAMAGEFTAKHF
RTWGASAIAFETLALAEAPIGLKAMLEPVTEALGNTPAIARKSYVHPALVALAKDKAAQI
EMRAALRLPRSTRHLSRAERGLIAFLAALDQAEPSPAKAA
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgccggactcgacgatcatctatcacgacgacagcgaagccggcatcacccgcaagaag
gtgcggggtggctggggctattggaaccccgcgggcgaacggatcaaggaccgcggcgag
attgatcggctcaacgcgatcggcctgccgcccgcctatcgcgacgcatggtattgcccc
agcccgcacggccatatccaggcggtcggctgggacgagaagggccgcaagcaatatcgc
tatcacctggaattccgcgagacgcaggaagccgccaaatatgcgcgctgccccgccttc
gggctcgcgctgcccaagctgcgcaagcgcgttgagcgcgacctgcgctcgcccaaattg
agccgcgcgcgtgcggtggcggcggtagtgcggctgctcgaccacggccatgtccgcatc
ggcaacgaaggttatgccaaggccaataagagtttcggcgcgacgacgctgcgccagcac
cacgccaagctgaccggcaagacgctgcggctgcaatatcgagccaaatcgggcaagatg
cggctgatgacgatcaccgacggttcgctgatccgcttcgtgaaacgctgccaggacctg
cccggccagcatctgttccgctgggtcgaccaggcgggtgagacgcacccggtcacctca
agcgacgtcaacgcctatatccgcgaagcgatggccggcgaattcaccgccaagcatttc
cgcacctggggcgccagtgcgatcgccttcgagacgctggcgctcgccgaggcgccgatc
ggactgaaggcgatgctcgaacccgtcaccgaagcactcggcaacacccctgcgatcgcg
cgcaaaagctatgtccaccccgccttggtcgcgctcgccaaggacaaggcggcgcagatc
gaaatgcgcgccgcgctccgcctgccccgctcgacgcgccatttgtcgcgcgccgagcgc
gggttaatagcattcctggccgcgctcgaccaagccgagccctcgcccgccaaggccgcc
tga
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