Sphingomonas qomolangmaensis: NMP03_12395
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Entry
NMP03_12395 CDS
T08594
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sqo
Sphingomonas qomolangmaensis
Pathway
sqo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sqo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMP03_12395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sqo03019
]
NMP03_12395
03009 Ribosome biogenesis [BR:
sqo03009
]
NMP03_12395
Enzymes [BR:
sqo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NMP03_12395
Messenger RNA biogenesis [BR:
sqo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NMP03_12395
Ribosome biogenesis [BR:
sqo03009
]
Prokaryotic type
rRNA helicases
NMP03_12395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
UUL81979
LinkDB
All DBs
Position
complement(2596893..2598626)
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AA seq
577 aa
AA seq
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MTFQNIPPLLGEALAARGYTALTPVQASVIEPEALGRDMVVSAQTGSGKTVAFGLAMAEQ
LMEEGQLPQPRAPLALIIAPTRELALQVSRELEWLFAGAHARIATCVGGMDASKERRMLS
HGTHIVVGTPGRLRDHLERGALDLSALRVAVLDEADEMLDMGFREDLEEILDATPNERRT
LLFSATMPKPIVALAKRYQRDALRISTVGEDRGHGDIVYQAVAVAPADIEAVVVNLLRLH
EAETAMLFCATRDAVRRLHASLVERGFAAVALSGEHSQNERNHALQALRDQRARVCVATD
VAARGIDLPTLSLVVHVELPRDAETLQHRSGRTGRAGRKGTAILIVPYPRRKRVEGVLRG
AKINAEWIEAPTLEDIQKQDRERLLVALTAPIEIDDEDRALGARLLEQSTPEDIAARLVR
AHRATMPRPEEMLDQSQGGSNDRQERDRGPRAGFEDTVWYRMDIGRRQNADPRWLLPLLC
RRGHITKNEVGAIRIADNETLFEIPRAIAQKFNVAVQRSEAEDSSGIGIQAIDGPPSPGG
RERGGPPRNRLSARPVTRHKATPHRGSGGGGGRPPRG
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgactttccagaacattccgccgcttcttggtgaagcgctcgcagcgcgtggctatacc
gcgctgacccccgtccaggcttcggtgatcgagcccgaagcgctcggccgcgacatggtc
gtctcggcgcagaccggctcgggcaaaaccgtcgccttcggtctcgcgatggccgaacag
ctgatggaagagggccagctgccccagccgcgcgcgccgctcgcgctgatcatcgcgccg
acccgcgagctggcgctccaggtcagccgcgagctcgaatggctgttcgccggcgcgcat
gcccgcatcgccacctgcgtcggcggcatggacgcgtcgaaggagcggcggatgctcagc
cacggcacgcatatcgtcgtcggcacccccggccggttgcgcgaccatctcgaacgcggc
gcgctcgacctgtcggcgctgcgagtcgcggtgctcgatgaagccgacgagatgctcgac
atgggctttcgcgaagatctcgaggaaatcctcgacgcgacgccgaacgagcgccgcacg
ttgctgttctcggcgacgatgcccaagccgatcgtcgcgctcgccaagcgctaccagcgc
gacgcgctgcgcatctcgaccgtcggcgaggatcgcggccatggcgacatcgtctatcag
gcagttgcggtcgcgcctgccgatatcgaagcggtggtggtgaacctcctgcgcctgcac
gaagccgaaaccgcgatgctgttctgcgccacccgtgacgcggtgcgccggctccacgcc
agcctggtcgagcgtggcttcgcggcggtcgcgctgtcgggcgagcatagccagaacgag
cgcaaccacgcgctgcaggcgctgcgcgatcagcgcgcgcgcgtctgcgtcgccaccgac
gtcgccgcgcgcggcatcgatctgccgacgctcagcctagtcgtccatgtcgagctgccg
cgcgatgccgagacgctccagcatcgctcgggccgcaccgggcgcgcgggacgcaagggt
accgcgatcctgatcgtcccctatccgcgccgcaagcgagtcgaaggcgtgctgcgcggc
gccaagatcaacgccgaatggatcgaagcgccgacgctcgaggacattcagaagcaggac
cgcgaacgcctgctcgttgcgctgaccgcgccgatcgagatcgacgacgaggatcgcgcg
ctcggcgcgcggctgctcgaacagtcgacgcccgaggatatcgccgcacggctggtacgc
gcgcatcgcgcaacgatgccgcgccccgaggaaatgctcgaccagagccagggcggctcg
aacgaccgccaggaacgcgatcgcggcccgcgcgccgggttcgaggataccgtctggtat
cgcatggacatcggccgccgccagaacgccgatccgcgctggctgctgcccttgctgtgc
cgccgcggtcacatcaccaagaacgaggtcggcgcgatccgcatcgccgacaatgaaacg
ctgttcgaaatcccgcgcgcgatcgcccagaagttcaacgtcgcggtccagcgcagcgag
gccgaggattcgagcggcatcggcatccaggcgatcgacggcccgccctcgcccggcggc
cgcgaacgcggcggccccccgcgcaaccgcctcagcgcgcgcccggtaacccgccacaag
gcaaccccgcatcgcggcagcggcggcggcggcggtcgcccaccgcgcgggtaa
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