Serratia quinivorans: E4343_02820
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Entry
E4343_02820 CDS
T05941
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
squ
Serratia quinivorans
Brite
KEGG Orthology (KO) [BR:
squ00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
squ03032
]
E4343_02820 (topA)
03400 DNA repair and recombination proteins [BR:
squ03400
]
E4343_02820 (topA)
Enzymes [BR:
squ01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
E4343_02820 (topA)
DNA replication proteins [BR:
squ03032
]
Prokaryotic type
DNA Topoisomerases
E4343_02820 (topA)
DNA repair and recombination proteins [BR:
squ03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E4343_02820 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QBX65175
LinkDB
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Position
595023..597620
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSASKKSADSTEDKAKKKVK
KDPTTALVNRMGVDPYHGWKAHYEILPGKEKVVAELKSLAENADHIYLATDLDREGEAIA
WHLREVIGGDDKRFSRVVFNEITKNAIQNAFKQPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVERERDIKAFVPEEYWELHADLLAKGDTALQMEVTH
AHDKPFKPVNREQTHAALNVLEKARYTVLDREDKPTSSKPGAPYITSTLQQAASTRLSFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDALEMVRGYIGDNFGDKYLPKAPNQYSSKEN
SQEAHEAIRPSDVNVLAEQLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLSVKAADY
QLRAKGRTLRFDGWTKVMPALRKGDEDRTLPYVEVGSDLELQKLIPSQHFTKPPARYSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVESRRFYAEKMGEIVTDRLEENFRELMNY
DFTARMENGLDQVANNQAEWKAVLDEFFAEFSEQLETAEKEPEEGGMRPNQMVMTSIDCP
TCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPETEVLNILEGDDAETNALRARR
RCQKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEEGEFRLKGYDGPVVECDKCGSEMHL
KMGRFGKYMGCTNESCKNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELARFKDRLPEKLRYLADAPVADAEGNKTLVRFSRKTKQQYV
SAEKDGKATGWSAFYIDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgtaatagttgagtccccggcaaaagccaaaactattaataaatat
ttaggtaatgactacgtggtgaagtccagcgtcggtcatatccgtgatttgccgaccagt
ggctcagccagcaaaaagagcgctgactcaaccgaagacaaagccaagaagaaagttaaa
aaagatccaacgacggcgctggtaaatcgtatgggcgtcgatccttaccatggctggaaa
gcgcattacgaaatcctgccgggtaaagaaaaagttgttgccgagttaaagtcgttagcg
gaaaacgccgaccacatttatctcgcaaccgaccttgaccgcgaaggggaagccattgcc
tggcacctgcgggaagttatcggtggtgacgacaaacgctttagccgcgtggtgtttaac
gaaattaccaagaacgcgatccaaaacgcgttcaaacagcccggcgagctgaatatcgac
cgtgtcaacgcacagcaggcgcgtcgctttatggaccgcgtggtgggttacatggtctcg
ccactgctatggaaaaaaattgcccgtggcttgtccgctgggcgagtgcaatccgttgcg
gttcgactggtggtggagcgtgagcgcgacatcaaagccttcgtgccggaagaatactgg
gagttgcacgccgatctgttggcgaagggtgataccgcgctgcagatggaagtgacccat
gcccacgacaaacccttcaaaccggttaaccgtgagcagactcacgccgcactcaacgtg
ctggaaaaagcccgttatacggtactggatcgcgaagacaagccgaccagcagcaagccg
ggtgcaccttatattacttctacgttgcagcaggcggccagtacccgtctgagctttggc
gtgaagaaaaccatgatgatggctcagcgcctgtatgaagccggtcacatcacctatatg
cgtaccgactccaccaacctgagccaggatgcgctcgagatggtgcggggctacatcggt
gacaatttcggcgacaagtacctgccgaaagcgccgaaccagtacagcagcaaagaaaac
tcgcaggaagcacacgaagccatccgtccgtcggatgtcaacgtgctggccgagcagttg
aaagatatggaagcggatgcgcaaaaactgtatcagctgatttggcgccagtttgtggcc
tgtcagatgacaccggcgcagtacgactccaccacgctgtcggtgaaggccgctgattac
cagttgcgcgccaaaggccgtacgctgcgtttcgatggctggaccaaagtaatgcctgct
ctgcgtaagggtgatgaagaccgcaccttgccgtatgttgaagtaggcagcgatctggaa
ctgcagaaactgatcccaagccagcactttaccaaaccgccagcgcgttatagcgaagcg
tcattggtaaaagagttggaaaaacggggtattgggcgtccttcaacctacgcttcgatc
atttccaccattcaggatcgtggttatgtgcgagtcgaaagccgccgtttctacgctgag
aaaatgggtgagatcgttaccgaccgtctggaagaaaatttccgcgagctgatgaactat
gacttcaccgcacgcatggaaaacggtcttgaccaggtagccaacaaccaggccgagtgg
aaagcggtgctggatgagttctttgccgagttcagcgaacagctggaaacggcggagaaa
gagccggaagaaggcggtatgcgcccgaatcagatggtgatgaccagtatcgattgccca
acctgcggtcgcaagatgggtatccgtactgccagcaccggcgttttcctgggttgctcc
ggctatgcattgccgccgaaggaacgttgtaaaaccaccattaacctggtgccggaaacg
gaagtgctcaacattctcgaaggggatgacgcggaaaccaacgcgttgcgtgcccgccgt
cgctgccagaaatgcggcacggcgatggacagctacctgatcgataaccagcgcaagctg
cacgtgtgcggtaacaacccggcgtgtgacggctatgagatcgaagagggtgagttccgc
ctgaaagggtacgacggccctgtggttgagtgcgataagtgtggttctgaaatgcacctg
aaaatggggcgcttcggtaagtacatgggttgcaccaacgagagctgcaaaaatacccgt
aagatcctgcgtaatggtgatgttgcaccgccgaaggaagatccggttccattgccggaa
ctgccatgcgaaaagtcggacgcttactttgttctgcgtgacggcgctgccggtgtgttc
ctggcggccaataccttccctaaatcgcgcgaaacccgtgcgccgttggtggaagagttg
gcccgcttcaaggaccgtctgcctgaaaaactgcgctatctggcggatgcgccggtggcc
gatgcggaaggcaacaaaacgctggtgcgtttcagccgcaagaccaagcagcagtatgtc
tcggcagagaaagacggcaaagccactggttggtctgctttctacatcgatggcaaatgg
gttgaaggcaaaaaataa
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