Serratia quinivorans: E4343_02920
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Entry
E4343_02920 CDS
T05941
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
squ
Serratia quinivorans
Brite
KEGG Orthology (KO) [BR:
squ00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
squ03016
]
E4343_02920
Enzymes [BR:
squ01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E4343_02920
Transfer RNA biogenesis [BR:
squ03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
E4343_02920
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
QBX65194
LinkDB
All DBs
Position
complement(619366..621300)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRV
SATLHTEKEREIAEPETLIEPFLSRFVGRVQKRDDRLSIVPDHPLLKDAIQCRPVRGLNH
NFQAGDWAVAEMCRHPLKGDRGFNADLTQFITDGEDHLAPWWVTLARHNLEKEAPEMIAI
SEPDASLPREDLTALNFVTIDSASTEDMDDALFVQDNGDGSLQLTIAIADPTAYVEQGSP
LDEIARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNQRRPVLACRVTIGADGALADDIRF
FAAEIESKAKLVYDEVSDWLEGIAGWQPPSDDIAQQITLLKRVCDVRNSWRHQHALVFKD
RPDYRFVLGEKGEVLEIVTEQRRTANRIVEECMIASNVCAAIVLRDRLGFGIYNVHTGFD
PLLVEQAVTVLQANGVEADAEKLLTLEGFCELRRHLDSQPTQFLDSRIRRSQTYAEISTT
PGPHYGLGLEAYATWTSPIRKYGDMVNHRLLKAIIAEQPAEKPQDEVTVQLAERRRLNRM
AERDVGDWLYARYLKDKAGTDERFNAEIIDVTRGGLRVRLQDNGAVAFIPAPFIHAVRDE
MVCSQETGTVQIKGEVVYRQGDNLQVTIAEVRMETRSVIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcactctcagaccccg
cgcgttgaaggcgtagtaaaagggactgagaaaggctttggctttcttgaagtagacggt
caaaaaagctatttcattccgccaccgtacatgaagaaagtcatgcacggcgaccgggtg
agcgcgactctgcacaccgagaaagagcgcgaaatcgccgagccggaaactctgatcgag
ccattcctgtcgcgctttgttggccgagtgcaaaagcgcgatgaccgcttgtcaatcgtg
cccgaccatccgttgctgaaagacgcgattcagtgtcgtcccgtgcgtggcctgaaccac
aatttccaggccggtgactgggcagtggcagagatgtgtcgccacccgctgaaaggcgac
cgcggtttcaatgccgatctgacccaattcattaccgatggtgaagaccacctggcgcca
tggtgggtcacgctggcccgtcataatctggaaaaagaagctccggagatgatcgccatc
agcgagccggatgcttcactgccgcgtgaagacctgactgcgctgaattttgtcaccatc
gacagtgccagcaccgaagatatggacgatgcgttgttcgtacaggacaacggtgacggc
tcactgcaattgaccatcgccattgccgatccgaccgcctacgtcgagcaaggtagccca
ttggatgaaatcgcccgcaagcgcgccttcaccaactacctgccgggcttcaacatccct
atgttgccacgcgatctgtcagacaacctgtgttcactgcgcccgaaccaacgccgtccg
gtattggcctgccgcgtgaccatcggtgccgacggtgccctggctgacgacattcgcttc
ttcgccgccgagatcgagtcaaaagccaaactggtttatgacgaagtgtccgactggctg
gaaggcattgccggctggcaaccgccaagtgacgacattgcacagcaaatcaccctgctc
aagcgcgtgtgtgacgtgcgtaattcctggcgccaccagcacgctctggtatttaaagat
cgccctgactaccgctttgttctgggcgaaaaaggcgaagtgctggagatcgtcaccgag
cagcgccgcacggccaaccgtatcgttgaagagtgcatgattgcttccaacgtttgcgcc
gctatcgtgctgcgcgaccgcctcggctttggcatttacaacgtgcataccggtttcgat
ccgctgctggttgagcaggcggttaccgtgctgcaggccaacggcgtggaagccgatgcc
gagaaattgctgacgctggaagggttctgcgaactgcgtcgtcacctggattcacagccg
acccagttcctcgacagccgcatccgtcgttcccaaacttatgccgagatcagcaccaca
ccgggcccgcattatggcctggggctggaagcctacgccacctggacctcaccgatccgt
aaatacggcgatatggttaaccaccgtctgctgaaagccattatcgccgagcagcccgcc
gaaaaacctcaggatgaagtcaccgtccaactggcagagcgccgtcgtctgaaccgcatg
gcggagcgcgacgtgggtgactggttgtacgctcgctacctgaaagataaagccggcacc
gatgagcgcttcaatgccgagatcatcgacgtgacccgcggcggcctgcgtgtacgcctg
caggacaacggcgcagtggcctttatcccggctccatttattcacgcggtgcgtgatgaa
atggtctgcagccaggagaccggcacggttcagatcaaaggcgaagtcgtctatcgccag
ggggataacctgcaggtcaccatcgccgaagtgcgtatggaaacccgcagcgtgatcgcc
agaccggcggcctaa
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