Serratia quinivorans: E4343_06595
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Entry
E4343_06595 CDS
T05941
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
squ
Serratia quinivorans
Pathway
squ03030
DNA replication
squ03430
Mismatch repair
squ03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
squ00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E4343_06595 (holB)
03430 Mismatch repair
E4343_06595 (holB)
03440 Homologous recombination
E4343_06595 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
squ03032
]
E4343_06595 (holB)
03400 DNA repair and recombination proteins [BR:
squ03400
]
E4343_06595 (holB)
Enzymes [BR:
squ01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E4343_06595 (holB)
DNA replication proteins [BR:
squ03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E4343_06595 (holB)
DNA repair and recombination proteins [BR:
squ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E4343_06595 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNApol3-delta_C
DNA_pol3_delta2
HolB_lid
SmAKAP
Motif
Other DBs
NCBI-ProteinID:
QBX65874
LinkDB
All DBs
Position
complement(1429447..1430454)
Genome browser
AA seq
335 aa
AA seq
DB search
MNWYPWLNTPYRQLVGQYATGRGHHALLLHAAAGHGEDALAYGLSRWLICQRRNGEKSCG
ECHSCRLMLAGNHPDYHVLTPEKGKSSLGVEPIRQLIEILYSHAQQGGAKVIWLPQAELL
TEAAANALLKTLEEPPEKTYFLLSCREPSRLLATLRSRCLYWHLASPDEQLSLQWLNRQT
PGNQIDLLTALRLHDGAPLAAEQLLQPEHWQQRSALCAALSAALPQHDMLSLLPVLNHED
VAERLHWLCSLLMDAMKWQQGAAGFVLNQDQQPLVHQLASRLSSTSLQQAVQQWLHCRHQ
LLSVVGVNRELLLTEQLLGWEQLLGATGYFHPHSL
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgaactggtacccgtggctgaataccccttaccgccagttggtcgggcaatatgctacc
gggcgcggtcatcacgcactgttgttgcatgccgctgccggccatggtgaggatgcgctg
gcctatggcctgagccgttggctgatctgccaacgtcgcaacggtgagaaaagctgcggt
gaatgccatagctgtcggttgatgctggcaggaaatcacccggattatcacgtgctgacg
ccggaaaaaggcaaaagcagcctgggggtggagcccatccgccagctgattgagatcctt
tattctcatgcgcagcagggcggtgccaaggtgatctggctaccgcaggcggagttgctg
accgaggctgccgccaatgccctgttgaaaacgttggaagaaccgccggaaaaaacctat
ttcctgctgagctgccgtgagccttcacgcctgctggcaacgctgcgcagccgttgtttg
tactggcatctcgccagtccggacgaacagctcagtctgcaatggctgaatcggcagacg
ccgggtaatcagatcgatctcctgaccgccttgcgcttgcatgacggcgcacccttggcc
gcagagcaattactccagccggaacattggcaacaacgtagcgcgctgtgcgcggccctg
agtgccgctttgccgcagcacgacatgttgtcgctgctgccggtattgaatcacgaagac
gtcgctgagcggctacactggctatgttcgttgttgatggacgccatgaagtggcagcag
ggtgccgccggctttgttctgaaccaggatcagcaaccgctggtgcaccagctggccagc
cgcctgagcagcacgtcgctgcagcaagccgtgcagcaatggctgcattgtcgccatcag
ttgcttagcgtcgtcggcgttaaccgcgaactgctgctgaccgaacagttacttggctgg
gagcagttgctcggcgctaccggctatttccaccctcattcgctgtaa
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