Serratia quinivorans: E4343_06670
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Entry
E4343_06670 CDS
T05941
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
squ
Serratia quinivorans
Pathway
squ03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
squ00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4343_06670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
squ03019
]
E4343_06670
03009 Ribosome biogenesis [BR:
squ03009
]
E4343_06670
Enzymes [BR:
squ01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E4343_06670
Messenger RNA biogenesis [BR:
squ03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E4343_06670
Ribosome biogenesis [BR:
squ03009
]
Prokaryotic type
rRNA processing factors
E4343_06670
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QBX65888
LinkDB
All DBs
Position
1441459..1444827
Genome browser
AA seq
1122 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWEAIKKAAEGRAAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAIIVPNDQMQ
TPHYSVLRVRKGEETPTLSYLLPKLHEEEMAQPLEDAPMERKRPEQPALASFSLAADAPP
PAEEPVVAQATVAATATKQTAPAAAKPGLLGRLFGGLKALFAGEEQPVVEAKPVVEAPKS
EGNGENRRQDRRGQRRQGTGRKDRGERGERGERGDRPERGERKERGEGRDNREPRENREP
RDNREGRETREVRDEQRRNRRNAPQTTAAVTEEPLSEEAAKAQREEQQQRRDQRAERQRR
RQEEKRQAQQEVAALESVETATPANASVDEDLEERQMQNMQRRQRRPLSQKIRVLSAEEE
LHRAAEELLAPKAPVVKAQDVKPAQVEDSVKLLPETLEAPGEDDAQDNRANGENGMPRRS
RRSPRHLRVSGQRRRRYRDERYPTQSPMPLAGAFASPEMASGKVWVSYPVTQAAQVIEEA
EVQTEAVEIAADNVMAQEAVSVAAPVIAQAVAPVIEPEVVAPAEEPAQPVVETAEPAMAA
QAEETPAAPVAEAPAVVEETAVVEAAPVVEEAPAVEPAPVVEETPVVPAATVAEETVAEP
APVFVEPVVEAAPVQEVAAAVVVEEKAPVVQQQPVPVADVLYKHIATAPMTKAPAPDYVP
EQQQQSDWQRPSFNFEGKGSAGGHAAANQATAPATKPQPVND
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgccttggtagat
ggacagcggctgtatgatttggatattgaaagtccgggtcatgaacagaaaaaagcgaat
atttacaaaggcaaaatcactcgtatagaaccaagtcttgaagcagcgttcgtagattac
ggcgccgaacgacatggtttcctccctcttaaagaaatctctcgcgaatatttcccaagt
aactactcttctcatggtcgcccaaacatcaaagatgtgctgcgcgaaggccaggaagtg
atcgttcaggttgataaagaagaacgtggtaacaaaggcgctgccttgaccaccttcatc
agcctggccggcagttatctggtgctgatgccgaacaacccacgtgccggcggtatttca
cgccgcattgagggtgacgatcgcaccgaactgaaagaagctctttcttccctgcaactg
ccagatggcatgggtctgattgttcgcaccgcgggcgtgggcaaatctgccgatgcgctg
cagtgggatctgtcattccgcctgaagcactgggaagcaattaaaaaagccgctgaaggc
cgcgctgcgccattcctgatccatcaggaaagcaacgttatcgtgcgtgcattccgcgac
tatctgcgcccggacatcggcgaaatcctgatcgacaacccaaaggttctcgatctggcc
aaagagcacatcgctgccctgggccgtccggatttcagcagcaagatcaaactgtacagc
ggcgaaatccctctgttcagccactatcaaatcgaatctcaaattgaatccgctttccag
cgtgaagttcgcctgccttccggcggttcgatcgttatcgactccaccgaagcgctgacc
gctatcgatatcaactccgcgcgagcaacccgcggcggcgatatcgaagagactgcgttc
aacaccaacctggaagcggcggacgagattgctcgccagctgcgcctgcgtgaccttggc
ggcctgatcgttatcgactttatcgatatgaccccggttcgccatcaacgtgaagtggaa
aaccgtctgcgtgacgccgtccgtcaggaccgtgcacgtatccaaatcggtcgcatttcc
cgtttcggcctgcttgagatgtcgcgtcagcgcctcagcccatcactgggtgaatccagc
catcacgtctgcccgcgctgtaacggcaccggcaccatccgtgataacgaatcgctggca
ctttccattcttcgtctgatcgaagaagaagcgctgaaagaaaataccaaagaagttcac
gccatcgtgccagtacaggtggcatcttacctgctgaacgaaaagcgtgaatcggtgagc
gcgatcgaaaaacgtcagggtggcgtgaaagcgatcatcgtgccgaacgatcagatgcaa
accccgcactactcggtactgcgcgtgcgtaagggcgaagaaacaccaaccctgagctac
ctgttgccgaaactgcatgaagaagagatggcccagccactggaagatgcaccgatggag
cgcaagcgtccggagcaacccgcactggcttcgttctctctggctgcagatgccccacca
ccagcagaagaacctgttgtggctcaagctaccgtcgccgctactgctaccaagcaaacc
gcaccagccgctgccaagccgggcttgttgggccgtctgttcggtggtctgaaagcgctg
tttgccggtgaagagcagccggttgtcgaagccaaacctgtggttgaggcgccgaagtct
gaaggcaacggtgaaaaccgccgtcaggatcgtcgtggtcaacgtcgtcagggtaccggt
cgtaaagatcgtggtgagcgcggagaacgtggtgagcgtggcgatcgtccagaacgtggc
gagcgtaaagagcgcggtgaaggtcgtgataaccgtgagccgcgtgaaaatcgcgaacct
cgcgacaaccgcgaaggccgtgaaacacgcgaagtgcgtgatgagcagcgtcgtaaccgc
cgtaatgcgccacaaaccactgctgccgtaaccgaagagccgctgtctgaagaagccgcc
aaggcacagcgcgaagagcagcaacagcgccgtgaccaacgtgccgaacgccagcgtcgt
cgtcaggaagagaaacgtcaggctcagcaggaagtggccgcgctggaaagcgtagaaacc
gcaacccctgccaacgccagcgttgacgaagatctcgaagaacgtcagatgcagaacatg
cagcgtcgtcagcgtcgtcctctgtcgcagaaaattcgcgtgctgtctgcggaagaagaa
ctgcatcgtgccgcggaagaactgctggcgccaaaagcaccggtagtgaaagcccaggac
gtgaagccagcccaggttgaagacagcgttaaactactgccggaaacccttgaagcaccg
ggcgaagatgatgcacaggataaccgagctaacggcgaaaacggcatgccacgccgctca
cgtcgttctccgcgccacctgcgtgtcagcggtcaacgtcgtcgccgttaccgtgacgag
cgttaccctacccagtcgccaatgccgctggcaggtgctttcgcctctccagagatggct
tccggcaaggtgtgggtgagttaccctgtcacacaagccgcgcaagtgattgaagaagca
gaagttcagactgaagctgttgaaatcgctgccgacaacgtcatggcgcaggaagccgtc
agcgtagccgctccggttattgcccaagccgttgcgccggtgatcgaaccagaagttgtg
gccccggcagaagaaccagcccaaccggttgttgaaaccgctgagccggcaatggctgcc
caggcagaagaaaccccggcagcaccggtggctgaagcgcctgcagtggtagaagaaacc
gcggtggttgaagctgcaccggtggtagaggaagccccagcggttgaacctgccccagtg
gttgaagaaacgccagtcgttccagcagcaaccgttgctgaagaaactgtcgctgaacca
gctccggtgttcgttgagcccgtcgttgaagccgcacccgtgcaggaagttgctgccgct
gtagtggtcgaagaaaaagcgccggttgtgcaacagcaaccagtaccggtggcagatgtg
ctgtataaacacatcgctactgcgccaatgaccaaggctcctgcgccggactatgtaccg
gaacagcagcagcaaagtgattggcagcgcccttccttcaacttcgaaggcaaaggttct
gcgggtggtcatgcggcggcaaaccaggctaccgcaccggcaaccaaaccgcagccggtt
aacgattaa
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