Serratia quinivorans: E4343_09575
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Entry
E4343_09575 CDS
T05941
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
squ
Serratia quinivorans
Pathway
squ03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
squ00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4343_09575 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
squ03019
]
E4343_09575 (rhlE)
Enzymes [BR:
squ01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E4343_09575 (rhlE)
Messenger RNA biogenesis [BR:
squ03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E4343_09575 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HI1480
UvrD-helicase
Shikimate_DH
Cas3-like_C_2
DUF6256
Motif
Other DBs
NCBI-ProteinID:
QBX66428
LinkDB
All DBs
Position
complement(2070107..2071477)
Genome browser
AA seq
456 aa
AA seq
DB search
MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSKHDHAVKGRRPVRALILTPTRELAAQIGENVESYSKYLRLRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQRAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKGLANKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMI
GEGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALPGYEPDPSIKAEPIINGRQAGGRGAPRGNGGGQRSGNGGGQRSGNGG
GNGGQRENRGGGSARPQGDGKPRSGAPRRPRSRPAE
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaaaccctcggcttaagtgctgaaattctgcgcgctgttgaagaacagggc
tatcgcgaacctacgccaattcagcgccaggctattcctgtcgtattggaaggtcgtgac
ctgatggccagcgcccagaccggtaccggtaaaaccgctggctttaccctgccgctgcta
cagctgctgagtaagcatgaccatgcggtcaaaggtcgccgtccggtacgtgcgttgatc
ctgacgcctacccgtgaactggctgcgcagatcggcgaaaacgtcgaatcctacagcaaa
tacctgcgcctgcgttcgctggtggtatttggtggcgtgagcatcaacccgcagatgatg
aaactgcgcggcggcgtcgacgtgctggtggcaacaccgggtcgcctgctggatctggaa
caccagcgcgcggttgacctgtccaaaattgaaattctggtgctggacgaagcagaccgc
atgctggatatgggctttatccatgatatccgccgcgtgctggccaaactgcctgccaag
cgtcagaacctgctgttctctgcaaccttctccgacgacatcaaagggctggccaacaaa
ttgttgcacaacccggcatcggttgaagtggcgcgccgcaacaccgcgtccgagcagatt
gagcaaagcgtgcacttcgttgacaagaagcgtaagcgggaactgctgtcccagatgatc
ggcgaaggtgactggaagcaagtcttggtgttcaaccgcaccaaacacggcgccaaccac
ctggctgaacagctgaacaaagacggcatcactgccgcagcgatccacggcaacaaaagc
cagggcgcgcgtacccgcgcattggccgattttaaagacggcaaaattcgcgtattggta
gctaccgacatcgcggcacgcggtctggacatcgaccagttgccacacgtggtgaactac
gagttgcctaacgtgccggaagactacgtgcaccgtatcggccgtaccggtcgtgctgaa
cgtaccggtgaggcgatctcgctggtgtgtgtggatgaacacaaactgctgcgtgatatc
gaacgcctgctcaaacgtgagatcccgcgtattgccctgccgggctatgaaccagatccg
agcatcaaggccgagccgatcatcaacggccgtcaggctggtggacgcggtgcgccacgc
ggcaacggcggtggtcaacgctccggtaacggtggcggccagcgcagtggcaacggtggc
ggcaatggcggtcagcgtgaaaaccgcggtggcggcagtgcgcgtccgcagggtgatggc
aagccgcgttcaggtgctccgcgccgtccgcgcagccgcccggctgagtaa
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