Serratia quinivorans: E4343_14165
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Entry
E4343_14165 CDS
T05941
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
squ
Serratia quinivorans
Pathway
squ03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
squ00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4343_14165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
squ03019
]
E4343_14165
03009 Ribosome biogenesis [BR:
squ03009
]
E4343_14165
Enzymes [BR:
squ01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E4343_14165
Messenger RNA biogenesis [BR:
squ03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E4343_14165
Ribosome biogenesis [BR:
squ03009
]
Prokaryotic type
rRNA helicases
E4343_14165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
DeaD_C
ResIII
CMS1
Cas3-like_C_2
UTP25_NTPase-like
DRTGG
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QBX67254
LinkDB
All DBs
Position
complement(3019161..3021122)
Genome browser
AA seq
653 aa
AA seq
DB search
MTTELETSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNLDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNVELLGERRLAKFAAKVQQQLESSDLDMYRGLLAKLQPGEEELEM
ETLAAALLKMAQGERPLILPPDPVFKPRQRREFNDRDDRGSDRRRDARPDSRDGGAERPR
RERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAGHSTIELPKGM
PGEILSHFTRTRILNKPMNMQLLGDAQPHERRERPAPAGNGERRGGARPFNGERREGANP
GRRSFGDRREGGAAAPAGNGGERRGGNFNRDGQRAPRRDDAAPAAPRRRFGDA
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgacctggggctgtctgctccgatcatttct
gccctgaccgatctgggctacgaaaaaccttcaccgatccaggctgagtgtattcctcac
ctgttgaacggccgtgatgtgctgggcatggcacagaccggtagcggcaaaactgcggcg
ttctcgctgccactgctgcacaaccttgacgcttccctgaaagcacctcagatcctggtg
ctggcaccgacccgcgaactggcggttcaggttgctgaagcgatgaccgatttctccaaa
cacatgcatggcgttaacgtcgtggccctgtacggcggccagcgttatgacgtgcagctg
cgcgctctgcgtcagggcccgcaaatcgtagtagggactccaggccgtctgctggaccac
ctgaagcgtggcaccctgaacctctctaacctgagcggtctggtgctggatgaagccgac
gaaatgctgcgtatgggctttatcgaagacgtagaaaccatcatggcagagatcccggct
gaacatcagaccgcactgttctctgcaaccatgccggaagctatccgtcgcattacccgc
cgctttatgaaagagccgcaggaagtgcgcattcaatcgagcgtgactacccgtccagac
atcagccagagctactggactgtgcagggcatgcgtaaaaacgaagctctggtacgtttc
ctggaagctgaagactttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctg
gaagtggccgaagcgctggagcgcagtggttacagcagcgcggcactgaacggtgacatg
aaccaggccctgcgtgagcagaccctggagcgcctgaaagatggtcgtctggatatcctg
atcgcgaccgacgttgctgcccgtggcctggacgttgagcgtatcagcctggttgtgaac
tacgacatccctatggattccgagtcttacgttcaccgtatcggccgtactggccgtgct
ggtcgtgccggccgtgcgctgctgttcgtagaaaaccgcgaacgccgcctgctgcgtaac
atcgaacgcaccatgaagctgaccattccagaagttgaactgccaaatgtagaactgctg
ggtgagcgtcgtctggccaagttcgcagctaaagtacagcaacagctggaaagcagcgat
ctggacatgtaccgtggcctgctggctaaactgcagccgggcgaagaagagctggaaatg
gaaacgctggccgcagcactgctgaaaatggcacagggcgaacgtcctctgatcctgcca
ccggatcctgtcttcaaaccacgtcagcgtcgtgagttcaacgaccgtgacgaccgcggt
agcgaccgtcgtcgtgacgcacgtccagacagccgtgacggtggcgctgagcgtccacgt
cgtgaacgtcgtgacgttggcgaaatgcagttgtaccgcattgaagtgggccgtgatgat
ggcgttgaagttcgtcatatcgttggcgcgatcgctaacgaaggcgacatcagcagccgt
tacattggtaacatcaagctgtttgccggccactctactattgagctgccaaaaggcatg
ccgggcgagatcctgtctcacttcacccgtacccgcatcctgaacaagccgatgaacatg
caactgctgggcgatgcacagccgcacgaacgtcgtgagcgtcctgcacctgccggtaac
ggtgagcgtcgtggcggggctcgtccattcaacggcgaacgtcgtgaaggggcaaaccca
ggccgtcgttctttcggtgatcgtcgtgaaggcggtgctgctgcacctgccggcaacggt
ggcgagcgtcgtggcggtaacttcaaccgtgacggccaacgcgcaccacgtcgtgatgac
gccgctccggctgcaccacgtcgtcgcttcggtgatgcataa
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