Serratia quinivorans: E4343_14180
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Entry
E4343_14180 CDS
T05941
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
squ
Serratia quinivorans
Pathway
squ03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
squ00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4343_14180 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
squ03019
]
E4343_14180 (pnp)
03016 Transfer RNA biogenesis [BR:
squ03016
]
E4343_14180 (pnp)
Enzymes [BR:
squ01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
E4343_14180 (pnp)
Messenger RNA biogenesis [BR:
squ03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
E4343_14180 (pnp)
Transfer RNA biogenesis [BR:
squ03016
]
Prokaryotic type
tRNA degradation factors
E4343_14180 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
aRib
S1_RRP5
KH_2
KH-I_KHDC4-BBP
KH_SLS1_2
UPF0181
Motif
Other DBs
NCBI-ProteinID:
QBX67256
LinkDB
All DBs
Position
complement(3022322..3024439)
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AA seq
705 aa
AA seq
DB search
MLTPIIRKFQYGQHTLTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSL
NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINNQYVLNPTSDELKESSLDLVVA
GTAGAVLMVESEADVLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKAKWDWQAPAVNE
ALHARVAELAEGRLGDAYHITEKQERYAQVDAIKSSVVETLLAQDETLDVSEIQDILGSV
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPED
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNFVVLSD
ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISQFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKFAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPEAGSPAPEAE
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
ttgctgacaccgatcattcgcaaattccagtatggccagcataccctcactattgagacc
ggtatgatggctcgtcaggccactgccgccgttatggtaagcatggatgacaccgcagta
ttcgttaccgtagttggccagaaaaaagccaaaccaggccagagcttcttcccactgacg
gttaactatcaggagcgtacctacgctgctggtcgtatcccgggtagcttcttccgtcgt
gaaggccgtccgagcgaaggtgaaactctgacctcccgtctgattgaccgtccgatccgt
ccactgttcccggacagcttcctgaacgaagttcaggtgatcgcgaccgttgtttccctt
aacccgcaggttaacccggacatcgttgcgatgatcggtgcctctgccgccctgagcctg
tccggtattccgttcaatggcccaatcggttctgcgcgcgtgggttacatcaacaatcaa
tacgtattgaacccaaccagcgacgagctgaaagaaagcagcctggatctggtggttgcc
ggtaccgctggcgcagtactgatggttgaatccgaagctgacgttctgagcgaagatcag
atgctgggcgcggtggtgtttggccacgagcaacagcaaatcgttatcgaaaacattaat
tccctggttgccgaagccggcaaagccaagtgggactggcaggcacctgcagtcaacgaa
gcgctgcacgcgcgcgttgcagaactggcagaaggccgcctgggcgacgcttatcacatc
accgaaaaacaagagcgttacgctcaggttgatgcgatcaagagcagcgttgttgaaacc
ctgctggcacaggacgaaaccctggacgtgtctgaaattcaggacatcctgggtagcgtt
gagaaaaacgtcgttcgtagccgtgtgctgcgtggcgagccgcgtatcgacggccgtgaa
aaagacatgatccgtggtctggacgtgcgcaccggcgttctgccgcgtacccacggttcc
gcactgttcacccgtggtgagactcaggcactggttaccgcaacgctgggcaccgcccgt
gacgcgcagaacctggatgagctgatgggcgaaaagaccgacagtttcctgttccactac
aacttccctccgtactccgttggtgagaccgggatggtaggttcgccaaaacgtcgtgaa
attggtcacggtcgcctggcgaaacgtggcgtattggctatgatgcctaaaccagaagat
ttcccgtacacggtgcgtgtggtttctgaaatcaccgaatccaacggttcttcttcaatg
gcttccgtctgcggtgcttctctggcactgatggatgcgggtgtgccaatcaaggcagcc
gttgccggtatcgcaatgggcctggtgaaagaacaagacaactttgttgttctgtccgac
attctgggtgacgaagatcacctgggcgacatggacttcaaagtagccggtagccgtgac
ggtattaccgcgctgcagatggacattaaaattgaaggcatcacccgcgaaatcatgcag
gttgctctgaaccaggccaagggcgcgcgtctgcacatcctgggcgtgatggaacaggct
atcagcactccgcgtggcgatatctctcagtttgcaccacgtattcacactatccgcatc
aacccggacaagatcaaagacgtgattggtaaaggcggttctgtcatccgtgcgctgact
gaagagaccggcactaccattgaaatcgaagatgatggtacagttaaaatcgctgctacc
gacggtgagaaagcgaaattcgctatccgccgcatcgaagagatcactgccgagatcgaa
gtgggccgtatttaccagggtaaagttacccgtatcgttgatttcggcgcattcgtggcg
atcggcggcggtaaagaaggtctggtgcacatctctcaaatcgctgacaagcgcgttgag
aaagtgaccgactatctgcagatgggtcaggaagtaccggttaaggtactggaagttgac
cgtcagggccgtgtgcgtctgagcatcaaagaagcgaccgcaccagaagcaggttcacct
gcgcctgaagcagaataa
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