Serratia quinivorans: E4343_15300
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Entry
E4343_15300 CDS
T05941
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
squ
Serratia quinivorans
Pathway
squ03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
squ00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4343_15300 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
squ03019
]
E4343_15300 (recQ)
03400 DNA repair and recombination proteins [BR:
squ03400
]
E4343_15300 (recQ)
Enzymes [BR:
squ01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E4343_15300 (recQ)
Messenger RNA biogenesis [BR:
squ03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E4343_15300 (recQ)
DNA repair and recombination proteins [BR:
squ03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
E4343_15300 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
DUF6972
Motif
Other DBs
NCBI-ProteinID:
QBX67452
LinkDB
All DBs
Position
complement(3252357..3254189)
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AA seq
610 aa
AA seq
DB search
MSTAAVINKELLAEQVLRDTFGYQQFRPGQQTIINTAIGGQDCLVVMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLLAYGVAAACYNSTQTREQQLEVMAGCRSGQIKMLY
IAPERLMMDSFLDQLGGNPPALLAVDEAHCISQWGHDFRPEYRALGLLKQRFPDMPVIAL
TATADESTRGDIVRLLALQDPLVQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTTARLQSRGLSVGAYHAGLDNDRRAQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAILLYDPADMAWLRRCLEEKPAGQQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKHQNCGNCDICLDPPKRYDGLEDARKAL
SCVYRVGQRFGLGYIVEVLRGSNNQRIREYGHEKLPVYGIGREQTTEHWTSVLRQLIHLG
FITQNIAMHSALQLTEAARPVLRGELELQLAVPRIQSLKARSSSNQKSYGGNYDRKLFAK
LRKLRKSIADEENIPPYVVFNDATLLEMAEQMPIKAGDLLSVNGVGQRKLERFGAPFMAM
IRDHLDNDED
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaccgcagcagtgataaacaaagagttgctggccgagcaggtattacgcgatacc
ttcggctaccagcaattccgaccgggtcaacaaacgattatcaacacggcgatcggcggg
caggattgcctggtggtcatgccgaccggcggcggtaaatcgttgtgttaccaaatcccg
gcgctggtgatggatggcctgacgttagtggtttccccgttgatctcgctgatgaaagat
caggtcgatcaactgctggcctatggcgtcgccgctgcctgctataactcaacgcagacg
cgtgagcagcagctcgaggtgatggcgggttgccgcagcggccagatcaaaatgctgtat
atcgcccccgagcggctgatgatggacagtttcctcgatcagctcggcggcaacccacct
gccttgctggcggtggatgaagcgcactgtatttcgcagtggggccatgatttccgtcct
gaataccgtgcgttagggctgttgaagcaacgcttccctgatatgccggtgattgcgttg
accgcgaccgctgatgaatcgacccgtggtgacatagtccgcctgctggcattgcaggat
ccgctggtgcaggtcagcagttttgaccggccaaacatccgctatacgctggtggagaaa
ttcaagccgctcgaccaattgtggcggtttgtgcaggaccaacgtggcaaaagcggcatc
atttactgcaacagccgcgccaaggtcgaagacaccactgcccgcctgcaaagccgtggg
ctgagcgtgggagcctatcatgccgggttggacaacgaccgccgcgcgcaggtgcaggaa
gcgttccagcgcgacgatttgcaggtagtggtcgccaccgtcgcctttggcatgggcatt
aacaaacccaacgtgcgctttgtggtgcactttgatattccgcgcaatatcgaatcttat
tatcaggaaaccggccgtgccgggcgtgacggcttaccagccgaggcgatcctgctgtat
gacccggccgatatggcctggctgcgccgctgtctggaggaaaagcccgccgggcagcag
ctggatatcgagcgacacaagttgaacgccatgggggcttttgccgaagcgcaaacctgc
cgccgcttggtgctgctcaactattttggcgaaggtaaacaccagaactgcggcaactgc
gatatctgcctggatcctcccaagcgttacgatgggctggaagatgcgcgcaaggcattg
tcctgtgtgtatcgcgtcggccagcgtttcgggctgggttacattgtcgaagtgctgcgc
ggttccaataaccagcgtatccgcgaatacggacatgagaaactgccggtgtacggaatt
ggccgcgagcagaccaccgaacactggaccagcgtgctgcgtcagttgatccacctgggc
tttatcacccagaacattgccatgcactcggcgctgcaactgaccgaggccgcgcgcccg
gtgctgcggggtgagctggaactgcaattggcggtaccgcgcatccagagcctgaaggcc
cgcagcagcagtaaccaaaagtcctacggcggcaattacgatcgcaaactgttcgccaaa
ttgcgcaagttgcgaaaatcgattgccgacgaagaaaatatcccgccttatgtggtgttt
aacgatgccaccttgttggaaatggcggagcagatgcctatcaaggccggcgacctgttg
agcgttaacggtgtcggtcagcgcaagctggagcgttttggcgcgccgtttatggcgatg
atccgcgatcacctcgataatgacgaagattaa
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