Serratia quinivorans: E4343_15500
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Entry
E4343_15500 CDS
T05941
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
squ
Serratia quinivorans
Pathway
squ03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
squ00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4343_15500 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
squ03019
]
E4343_15500 (rhlB)
Enzymes [BR:
squ01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E4343_15500 (rhlB)
Messenger RNA biogenesis [BR:
squ03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E4343_15500 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBX67486
LinkDB
All DBs
Position
3291586..3292872
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AA seq
428 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPLVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLTSTFHYLLSHPAKQDRKINQPRALIMAPTRELAVQIHSDAEALSQSTGLKMGLAYG
GDGYDKQLKVLESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPAVDQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILD
DFTKGNLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLA
CEEYALNLPAIETYTGHSIPVSKYNSDALLSDLPAPKRLARPRGGNGPRRNSAPRRGGAP
RNNRKRSG
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttgaccgaacagaagttttccgacttcgccctgcacccgttagtc
cttgaagcccttgaaaagaaagggtttcaacattgcacgcctatccaggcgttagcattg
ccgctcacgctctctgggcgtgacgttgcaggtcaggcgcaaaccggtaccggaaagacg
ttggcatttttaacgtctacttttcactatttgctttctcacccggcgaaacaggatcgc
aagatcaaccagccgcgcgccttgatcatggcgccaacgcgtgaactcgcggtgcagatc
cactccgatgcggaagccctgtcccagtccacaggcctgaaaatgggtctggcatacggc
ggcgatggctacgacaaacagctgaaagtgctggaaagcggcgtggatatcctggtggga
actaccggtcgtttaattgattacgccaaacagaactatatcgatctgggcgcgatccag
gttgtggtgctggatgaagccgaccgcatgtacgatctgggctttatcaaagacattcgc
tggttgttccgccgcatgcctgcggtcgatcaacgcctgaacatgctgttctctgccacc
ctttcctaccgcgtacgcgagctggctttcgagcagatgaacaacgctgaatatgttgaa
gtggaaccggaacagaaaaccggccaccgcattaaagaagaattgttctacccgtccaac
gaagaaaaaatgcgtctgctgcagacgttgatcgaagaagagtggcctgaccgctgcatc
atcttcgccaacaccaagcaccgctgtgaagacgtttggggccatctggctgccgatggt
caccgcgtaggcctgttgaccggcgatgtggcgcagaaaaaacgcctgcgtattctcgat
gacttcaccaagggcaacctcgatattctggtcgccaccgacgtcgctgcccgcggcctg
catattccgttggttacccacgtcttcaactacgacttgcctgacgactgcgaagactac
gttcaccgtatcggtcgtaccggccgtgccggcgaaagcggtcattccatcagcctggct
tgcgaagagtacgcgctcaacctgccggcgatcgaaacctataccggtcacagcattccg
gtgagcaagtacaacagtgatgcgttattgagtgacctgcctgcgccgaaacgcctggca
cgcccacgcggcggcaacggcccacgccgtaactccgcgccacgtcgtggcggtgcgcca
cgcaataaccgtaaacgttcaggctga
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