Serratia quinivorans: E4343_16095
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Entry
E4343_16095 CDS
T05941
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
squ
Serratia quinivorans
Brite
KEGG Orthology (KO) [BR:
squ00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
squ03032
]
E4343_16095 (gyrB)
03400 DNA repair and recombination proteins [BR:
squ03400
]
E4343_16095 (gyrB)
Enzymes [BR:
squ01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
E4343_16095 (gyrB)
DNA replication proteins [BR:
squ03032
]
Prokaryotic type
DNA Topoisomerases
E4343_16095 (gyrB)
DNA repair and recombination proteins [BR:
squ03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E4343_16095 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
GyrB_hook
Toprim
HATPase_c
HATPase_c_3
DUF6865
Motif
Other DBs
NCBI-ProteinID:
QBX67597
LinkDB
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Position
complement(3428127..3430541)
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AA seq
804 aa
AA seq
DB search
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQ
VTIHADNSVSVQDDGRGIPTGIHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGETDQTGTTVRFWPSYETFTNNV
EFEYDILAKRLRELSFLNSGVSIRLKDKRTDKEDHFHYEGGIKAFVEYLNKNKTPIHPNV
FYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKE
GYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVDY
LMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSEL
YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR
DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVKKG
KQEQYIKDDEAMDQYQISIAMDGATLHTNASAPALAGEPLEKLVAEHYSVQKLIGRMERR
YPRALLNNLIYQPTLAEGDLSDQAKVKTWIDSLVKLLNDKEQHGSSYDSVIFENRERQMF
EPVLRIRTHGVDTDYALDFDFIHGGEYRKICVLGEKLRGLIEEDAFIERGERRQPVESFE
QALEWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL
MGDAVEPRRAFIEENALKAANIDI
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaattcttatgactcctcaagtatcaaggtattaaaagggctggacgcggtgcgt
aagcgcccgggcatgtatatcggcgacaccgatgatggcaccggtctgcaccacatggta
ttcgaggttgtggacaacgctatcgacgaagcactcgctggccactgtagtgacatccag
gtgaccatccatgccgataactccgtttcggtacaggatgacggccgtggtatcccgacc
ggtattcacgaagaggaaggggtttctgcggcgcaggtgatcatgaccgtgctgcatgcc
ggcggcaaatttgatgacaactcctacaaggtttccggcggtctgcacggcgtgggcgtt
tctgttgttaacgccttgtccgagaagctggaactggttatccgtcgcgaaggcaaggtg
cacgaacagacctacgccatgggcgagccacaggcgccgctgaaagtggtcggtgaaacc
gatcagaccggcaccacggtgcgtttctggccgagctatgaaaccttcaccaataatgtc
gaatttgagtacgatattctggccaagcgcctgcgcgaactctcattcctgaactcgggc
gtgtctatccgcctgaaagacaaacgtaccgacaaagaagaccacttccactacgaaggc
ggtatcaaggcgtttgttgagtacctgaacaaaaacaaaaccccgatccatccaaacgtg
ttctatttctcgaccatgaaagatgacatcggtgtggaagtggcgctgcagtggaacgac
ggtttccaggaaaatatctactgcttcaccaacaacatcccacagcgtgatgggggtacc
cacctggtcggtttccgtaccgcgatgacccgtaccctgaacagctacatggataaagaa
ggctacagcaaaaaagccaaaatcagcgccaccggtgacgatgcgcgtgaaggcctgatt
gccgtggtttcggtgaaagtgccggatccgaagttctcttctcagaccaaagacaagctg
gtttcttccgaggtgaaaaccgcggttgaaacgctgatgaatgaaaagctggtcgattat
ctgatggaaaacccgggcgacgcgaaaatcgtcgtcggcaaaatcatcgatgcggcgcgt
gctcgtgaagcggcgcgtaaagcgcgtgaaatgacccgtcgtaaaggcgcattggatctg
gccggcctgccgggcaaactggcagactgtcaggaacgcgatccggcgctgtccgaactg
tacctggtggaaggggactcagcgggcggctctgccaagcaggggcgtaaccgtaagaac
caggcaatcttgccgttgaaaggtaaaatcctcaacgttgagaaagcacgcttcgacaag
atgctgtcttcgcaggaagtggcgacgctgatcactgcactgggctgcggcattggccgc
gatgagtacaacccggacaaactgcgttaccacagcatcattatcatgaccgatgccgac
gtcgatggctcgcacatccgtacgctgctgttgaccttcttctaccgtcagatgccggaa
atcattgagcgcggccacgtgttcattgctcagccgccgctgtacaaggtgaaaaaaggc
aagcaggaacagtacatcaaagatgacgaagcgatggatcagtaccaaatctctatcgca
atggacggcgcaaccctgcacaccaacgccagcgcaccagcacttgccggtgagccattg
gaaaaactggttgccgagcactacagcgtgcagaagctgatcggtcgtatggagcgccgc
tacccgcgtgcactgctgaacaacctgatttaccagccaactttggcagagggcgatctg
agcgatcaggccaaggttaaaacctggattgattcgctggtgaaactgctgaacgacaaa
gagcagcatggcagcagctatgactcggtgatctttgagaaccgtgagcgccagatgttt
gagccggtactgcgcatccgtacccacggtgtggataccgactacgcgctggacttcgac
ttcatccacggcggcgaatatcgcaagatctgcgtgctgggtgagaaactgcgcggcctg
atcgaagaagatgccttcatcgaacgtggtgagcgtcgtcaacccgttgaaagcttcgag
caggcattggagtggctggtgaaagagtcacgccgtgggctggcagttcagcgttataaa
ggtctgggtgaaatgaacccagagcagctgtgggaaaccaccatggatccggaaagccgc
cgcatgctgcgcgtgaccgtgaaggacgccattgctgctgaccaactgttcaccaccctg
atgggtgatgcggttgagcctcgtcgtgcctttatcgaagaaaatgccctgaaagcggca
aacatcgatatctaa
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