Serratia quinivorans: E4343_20955
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Entry
E4343_20955 CDS
T05941
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
squ
Serratia quinivorans
Pathway
squ03410
Base excision repair
squ03430
Mismatch repair
squ03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
squ00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
E4343_20955 (recJ)
03430 Mismatch repair
E4343_20955 (recJ)
03440 Homologous recombination
E4343_20955 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
squ03400
]
E4343_20955 (recJ)
DNA repair and recombination proteins [BR:
squ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
E4343_20955 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
E4343_20955 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E4343_20955 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2065
Motif
Other DBs
NCBI-ProteinID:
QBX68487
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All DBs
Position
4472845..4474578
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AA seq
577 aa
AA seq
DB search
MSIKTQLRRRAATDDSHLPASLHPLLRRLYALRGVQAEQELERSVKGMLPWQQLDGIDTA
VGILQQALAASRRIMVVGDFDADGATSTALTVLALRSMGGSAVDYLVPNRFEDGYGLSPE
VVEQAATRGAELILTVDNGISSHAGVDVAHAKGMQVLVTDHHLPGETLPAAEAIVNPNLR
GCEFPSKSLAGVGVAFYLMLALRARLRDSGWFEQRALAMPNLAELLDLVALGTVADVVPL
DANNRILVYQGLNRIRAGKCRPGIRALLEVANRDARQLAANDLGFALGPRLNAAGRLDDM
SIGVALLLSDDIAQARMLANDLDALNLTRREIEQGMQVEALQLCDELERSSTALPYGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNP
GLMMKFGGHAMAAGLSLEESKFDEFRQRFGDLVGEWLDPAMLEGVIWSDGELAMQELSLE
TAELLREGGPWGQAFPEPTFDGTFRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTT
LWPDSSVREVELAYKLDVNEFRGNRNVQLLIQHLWPR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgagcatcaaaacacaactacgccgccgtgcggcgacggacgacagccatttgccagcc
agcctgcacccgctgttgcgccgtttatatgcgctgcgtggcgttcaggctgagcaggaa
ttggaacgtagcgtcaaaggcatgctgccgtggcagcagttggatggcattgacaccgcc
gttggcattctgcaacaggcgctggcggcgagtcgccgcatcatggtggtgggggacttc
gacgccgatggcgccaccagtaccgcgttgacggtgttggcgctgcgcagcatgggcggc
agtgcggtcgattatctggtgccgaatcgttttgaggacggctacggcctgagtcccgaa
gtggtcgaacaggcggcgacgcgcggtgcggaattgatcctcacggtggataacggcata
tcttcccatgcgggagtggacgtggcccacgccaaaggcatgcaggtgctggtgactgac
caccacctgccgggggaaaccctgccggcggcggaagcgatcgtcaacccgaacctgcgc
ggctgtgagttcccttccaaatccctggccggcgtcggtgtggctttttatctgatgctg
gcgctgcgtgcgcggctgcgtgacagcggctggttcgaacaacgtgcgctggcgatgccg
aacctggcggaactgctggatctggtcgcgctcggtacggtggcggacgtggtgcctctc
gacgccaacaaccgcattctggtgtatcagggcctgaaccgcatccgcgccggtaaatgc
cggccgggcatccgggcgctgctggaagtggctaatcgtgatgcgcgtcagctggcggcc
aacgatctcggctttgcgctggggccgcggctcaacgccgccgggcggctggatgatatg
tcgatcggcgtggccttgttgttgagtgatgacatcgcgcaggcgcgtatgttggctaac
gatcttgatgcgctcaatctgacacggcgtgagattgaacagggcatgcaggttgaagct
ctgcagctgtgcgacgaactcgagcgcagcagcaccgccttgccatacgggctggcgatg
tatcatcctgagtggcatcagggcgtggtggggattttggcctcacggatcaaggagcgc
ttccatcgcccggtgatagcctttgcaccggccggtgagggcattcttaaaggttcgggc
cgttcgatagccggtctgcacatgcgtgatgcgcttgagcggttggatacgctgaatccg
gggttgatgatgaagttcggtggtcatgccatggcggccgggctgtcgctggaagagagc
aaattcgacgagttccgccagcgctttggcgatctggtgggggaatggctcgatccggcg
atgctggaaggggtgatttggtctgacggcgaactggcgatgcaggaactttcgctcgaa
acggcggagctgttgcgcgagggcggcccctggggccaggcgttcccggaaccgaccttc
gatggcacattccgcatcctgcagcagcggctggtgggcgagaaacacctgaaactgatg
gtagaaccgcttggcggcggcccgctgctggacggtatcgcgttcaatgtcgataccacc
ctgtggcccgacagcagcgtgcgcgaagtggaactggcctacaagctcgacgtcaacgag
ttccgtggcaaccgcaacgtgcagttactgatccagcacctctggccgcgttga
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