Streptomyces qinzhouensis: FQU76_06540
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Entry
FQU76_06540 CDS
T06686
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sqz
Streptomyces qinzhouensis
Brite
KEGG Orthology (KO) [BR:
sqz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sqz03019
]
FQU76_06540 (hrpB)
Enzymes [BR:
sqz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FQU76_06540 (hrpB)
Messenger RNA biogenesis [BR:
sqz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FQU76_06540 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_11
AAA_19
AAA_22
ResIII
AAA_30
Helicase_RecD
CON_HrpB
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QDY76244
UniProt:
A0A5B8J730
LinkDB
All DBs
Position
1587999..1590551
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AA seq
850 aa
AA seq
DB search
MIRTEALDRLPVRHCVPELLAALDRHGTAVLHAPPGTGKTTLVPVALAGLVGTGRPRRVL
VAEPRRMAVRAAARRMAWLLGQEVGEAVGYTVRGERRVGAGTLVEVVTTGVLLQRLQRDP
ELAGVDTVLLDECHERHLDADTALAFLVDVRAALRPELELIAASATSDTDAWARLLTSLD
GASGPAPVVRGRGEGFGCEVHFAPPPAGIRPAHGTRVDPALLRHIAATVRLALARHEGDV
LCFLPGTGEIARTAGLLDGVDAEVLQLHGRAPAAVQDAVLRGGAERRRVVLATSVAESSL
TVPGVRIVVDSGLAREPRTDHARGLGSLTTVPVSAAGAAQRLGRAGREAFGTVYRCWAEA
EDGRWARFPAPEISVADLTGFALRVACWGDPSAAGLALLDAPPGGAMAAAGSVLRAVGAV
DRDGRATERGVLMARLGVHPRLARALLDGAGKVGAGRAAQVVGLLSEEPPREYGDDLATA
WRTARRGGDGYAGRWRAEVRRLESALAAVAPAGRGAGRAAGSGLSDDAAAGLVTALAFPE
RVARSRGEGSFLMASGTRGEVGAGSVLRGAPWLAVAVADRPVSAASARVRLAALVDEETA
RAAAGHLLVSEEQVRWEDGQVVARSVRRLGAVELSVRPLTDPDPVLLRAAVLDGIRREGF
GLLHWTREARGLRDRLAFLHRAVGDPWPDTADAALLERAEEWLEPELSRVRRRADLGRIH
AEACLRRLLPWASGEAARLEQLAPERIAVPSGSLIRVDYGGEQPVLAVKLQELFGLEATP
EVAGVPVLVHLLSPAGRPVAVTADLASFWRDGYRSVRAELRGRYPKHPWPEDPSKAEPTR
HTRARAARGR
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgatccgaaccgaggcactcgaccggctcccggtccgccactgcgtccccgagctgctg
gccgcgctcgaccggcacggcaccgcggtgctgcacgcgcccccgggcacggggaagacg
acgctggtgccggtggcgctggccgggctggtcggaaccggcaggccgcgccgggtgctg
gtcgccgagccacggcggatggcggtgcgtgcggcggcccggcggatggcctggctgctg
ggtcaggaggtcggcgaggcggtcggctatacggtccgcggcgaacgccgggtcggcgcg
ggaaccctggtcgaggtggtgaccaccggggtgctgctccagcgcctccagcgcgatccc
gagctggcgggggtggacacggttcttctcgacgagtgtcatgagcgccatctcgacgcc
gatacggcactggccttcctggtcgatgtgcgggccgcgctccggcctgagctggagctg
atcgcggcctcggcgacgagcgacacggatgcctgggcacggttgctgacctcactggac
ggcgcctccggtcccgcgcccgtggtccgggggcggggcgagggcttcggctgcgaggtg
cacttcgcgccgccgccggccgggatccggcccgcccacgggacccgggtggatccggcc
ctgctgcggcatatcgcggcgaccgtgcggctggcgctcgcccggcacgagggggatgtg
ctctgttttctgcccgggacgggagagatcgcccggacggcggggctgctggacggggtg
gacgcggaggtcctccagttgcacgggcgggcaccggccgcggtccaggacgcggtgctg
cggggtggcgccgagcggcgccgggtggtgctggccacctcggtcgcggagtccagcctg
acggtgcccggggtgcggatcgtggtggattcggggctggcccgggagccccggaccgat
catgcgcgggggctcggatcactgacgacggtcccggtgtcggcggcgggagcggcccag
cggctcggccgggccgggcgggaggccttcggcacggtgtaccggtgctgggccgaggcg
gaggacgggcggtgggcccggtttcccgcaccggagatcagcgtcgcggatctgacgggg
ttcgccctgcgggtggcctgctggggcgatccgtcggcggcggggctggccctgttggac
gctccacccggtggggcgatggccgcggcgggctcggtgctgcgggccgtcggcgcggtg
gaccgggacgggcgggcgacggagcgaggtgtgctgatggcccggctcggggtgcatccc
cggctcgcccgggcgctgctggacggtgcggggaaggtcggcgcgggccgggcggcgcag
gtggtggggctgctgagcgaggagccaccccgggagtacggcgacgatctggcgaccgcc
tggcggacggcccggcgcggcggtgacggctacgcgggccgctggcgggccgaggtgcgg
cggctggagtcggcgctggcggcggtggctccggccgggcgcggggccggccgggcggcc
gggagcgggctgtccgacgatgcggccgccgggctggtcaccgcgctggcgttcccggag
cgggtggcgcgttcccggggagagggttcgtttctgatggcctcgggcacccgcggggag
gtcggggcgggatcggtgctgcggggcgctccgtggctggcggtcgcggtggcggaccgg
cccgtgtcggcggcctcggcccgggtgaggctggcggcgctcgtcgacgaggagaccgcc
cgggcggccgccgggcatctgctggtgtcggaggagcaggtgcgctgggaggacgggcag
gtggtggcccggagcgtccgcagactgggtgcggtggagttgtcggtacgaccgctgacc
gatcccgatccggtcctgttgcgggccgcggtgctcgacgggatacgccgggaggggttc
ggactgctgcactggacacgggaggcccgggggctccgggaccggctggcctttctgcac
cgggcagtgggggatccctggccggatacggcggacgcggcactgctggagcgggccgag
gagtggctggagccggagctgtcccgggtccggcgccgggccgacctgggccggatccac
gcggaggcgtgtctgcggaggctgctgccgtgggcgagcggagaggccgcccgtctggag
cagctggcgccggagcggatcgcggtgccgagcggctccctgatacgggtggattacgga
ggggagcagccggtgctggcggtgaagcttcaggagctgttcggactggaggcgacgccc
gaggtggccggggtgccggtgctggtgcatctgctctcccccgccgggcggccggtcgcg
gtgaccgcggatctggcctcgttctggcgggacggctaccgctcggtccgggcggagctg
cgtggccgctatccgaagcacccctggccggaggacccctcgaaggccgagccgacccgg
catacgcgggcccgcgcggcccggggccgctga
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