Streptomyces qinzhouensis: FQU76_12235
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Entry
FQU76_12235 CDS
T06686
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sqz
Streptomyces qinzhouensis
Pathway
sqz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sqz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FQU76_12235 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sqz03400
]
FQU76_12235 (mfd)
Enzymes [BR:
sqz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FQU76_12235 (mfd)
DNA repair and recombination proteins [BR:
sqz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FQU76_12235 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDY77155
UniProt:
A0A5B8J5S4
LinkDB
All DBs
Position
complement(2921894..2925424)
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVRDPALAEAVEAARGAGRMHVDLVGPPAARPFAVAALARDAGRTVLAVTA
TGREAEDLAAALRSLLPEDSVAEYPAWETLPHERLSPRSDTVGRRLAVLRRLVHPAADDP
AAGPVSVVVAPIRSVLQPQVKGLGELVPVALRTGEQADLNEIVDALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDIEEIRYFKIADQRSLEVAEHGLWAPPCRELL
LTPQVRERAAELAEAHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPEGAMTL
VCDPERVRTRAADLVATSREFLHASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWTVAPFAADEELSDDTLKLGMHAPESYRGDTARALADTKGWLADSWRTVFVTEAHGPAA
RTVEVLGGEGVPARLDADLTEITPSVVHVACGSIDYGFIDPGLRLAVLTETDLSGQKAAG
KDGRRMPTRRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTMHRLGGADWTKTKARAKKAVKEIAADLIRLYSA
RMAAPGHVFGPDTPWQRELEDAFPYAETPDQLSTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQSDTEAKA
TLEGLRDGTVDVVIGTHRLFSSETKFKDLGLVVVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMAENVLEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGV
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIAAANSEEDVKAVRDELTDRYGKLP
EPVENLLLVAGLRMLARACGVGEIVLQGNNIRFAPVELRESQELRLMRLYPRTVIKPAAN
QILVPRPTSGKIGGKPVVGRELLAWTGEFLTTILGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctggacgcagtcgtacgtgaccccgcgctcgccgaggccgtc
gaggccgcccgtggcgcgggacggatgcacgtggatctggtggggccgcccgccgcgcgg
cccttcgccgtggcggcgctggccagggacgccgggcggaccgtgctcgcggtcaccgcg
accggccgggaggccgaggacctcgccgctgccctgcgctcgctgctgcccgaggactcc
gtcgccgagtaccccgcctgggagaccctgccccacgagcggctctcgccccgctcggac
acggtcggccgccggctcgccgtgctccgccgactggtccaccccgccgccgacgatccg
gccgccgggcccgtctccgtcgtggtcgccccgatccgctccgtactccagccgcaggtc
aaaggcttgggcgaactggttccggtagcgctgcgcaccggcgaacaggccgatctgaac
gagatcgtcgacgcgctcgccgccgccgcgtactcccgggtcgagctggtcgagaagcgt
ggcgaattcgccgtccgcggtggcatcctcgatgtcttcccgcccaccgaggagcacccc
ctgcgggtggagttctggggcgacgacatcgaggagatccgctacttcaagatcgccgac
cagcggtcgctggaggtcgccgaacacgggctgtgggccccgccctgtcgtgagctgctg
ctcaccccgcaggtccgggagcgggccgccgagctcgccgaggcccaccccgagctgggc
gaactgctcggcaagatcgccgaggggatcgcggtcgagggcatggagtccctcgcgccc
gtcctcgtcgacgatatggagctgctcctcgacgtcctccccgaaggcgcgatgacgctg
gtctgcgatccggagcgggtacggacccgggccgccgacctcgtcgccacctcgcgcgag
ttcctccacgcctcctgggccgcgaccgcgggcggcggcgaggcccccatcgatgtcggc
gccgcctccctgtggagcatcgccgacgtccgcgaccgggcccgcgagctggacatgatg
tggtggacggtggccccgttcgccgccgacgaggaactgtccgacgacaccctcaagctc
ggtatgcacgcccccgagtcgtaccgcggcgacaccgcccgcgccctcgccgacaccaag
ggctggctcgccgacagttggcgcacggtcttcgtcaccgaggcccacggccccgccgcc
cggaccgtcgaggtcctcggcggcgagggcgtcccggcccggctcgacgccgacctcacc
gagatcaccccgtccgtcgtccatgtcgcctgcggctccatcgactacggcttcatcgac
cccggtctccgcctcgccgtcctcaccgagaccgacctctccggccagaaggccgcgggc
aaggacggccggcggatgccgacccgccgccgcaagacgatcgacccgctgaccctggag
accggcgactacatcgtccacgagcagcacggcgtcggccgctatatcgagatggtgcag
cggaccgtccagggcgcgacccgtgagtacctcgtcgtcgagtacgcccccgccaaacgc
ggccagcccggcgaccggctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggggaggcccccaccatgcaccgcctcggcggcgcggactggaccaagaccaag
gcacgggccaagaaggccgtcaaggagatcgccgccgatctgatccggctctactcggcc
cggatggcggcccccgggcatgtcttcggccccgacaccccctggcagcgggagctggag
gacgccttcccgtacgcggagacccccgaccagctgtccaccatcgccgaggtgaaggag
gacatggagaagtcggtccccatggaccgtctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtacgggccgcgttcaaggcggtccaggacggtaagcaggtcgccgtc
ctcgtcccgacgacgctgctggtgcagcagcacttcggcaccttctccgagcggtactcg
cagttcccggtgaacgtccgggcgctctcccgcttccagtccgacaccgaggccaaggcc
accctggagggcctgcgggacggcacggtcgacgtcgtcatcggtacccaccggctgttc
tcgtccgagaccaagttcaaggacctgggactggtcgtcgtcgacgaggaacagcggttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaatgtcgacgtcctgacgatg
tcggcgaccccgatcccccggaccctggagatggcggtcaccggcatccgcgagatgtcg
acgatcaccaccccgccggaggagcggcaccccgtcctcaccttcgtcggcccgtacgag
gagaagcagatcggcgccgcgatccgccgcgaactgctccgcgaaggccaggtcttctac
atccacaaccgggtcgagtccatcgaccgggcggcggcgcggctgcgggagatcgtgccc
gaggcgcggatcgccaccgcccacggccagatggcggagaacgtactcgaacaggtcgtc
gtcgacttctgggagaagaagttcgacgtactggtgtcgacgacgatcgtcgaatccggg
atcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcgggttgtcg
cagctgcaccagctgcgcgggcgggtcggccggggccgggagcgggggtacgcgtacttc
ctctatccgccggagaagccgctcaccgagaccgcgcacgagcgcctcgccaccatcgcc
cagcacaccgagatgggcgcgggcatgtatgtggcgatgaaggacctggagatccgcggc
gcgggcaacctcctcggcggtgagcagtccggccatatcgcgggcgtcggattcgatctg
tacgtacggatggtgggcgaggccgtcgccgattaccgggcgtccctggagggcggcgtc
gaggaggagccgccactggaggtcaagatcgaacttccggtcgacgcgcatgtcccgcac
gactacgcgcccggcgagcggctccggctccaggcctaccggtccatcgccgcggccaac
tcggaggaggacgtcaaggcggtacgggacgagctgaccgaccgctacggcaagctcccc
gagccggtggagaacctgctgctggtcgccgggctgcggatgctggcccgcgcctgcggg
gtcggcgagatcgtcctccagggcaacaacatccgcttcgccccggtggagttgcgggag
tcgcaggagctgcggctgatgcggctctacccgcgcacggtgatcaagccggccgcgaac
cagatcctggtgccgcgcccgaccagcgggaagatcggcggaaagccggtggtgggccgg
gaactgctggcgtggacgggcgagttcctgacgacgatcctcgggagctga
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