Streptomyces qinzhouensis: FQU76_15480
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Entry
FQU76_15480 CDS
T06686
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sqz
Streptomyces qinzhouensis
Brite
KEGG Orthology (KO) [BR:
sqz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sqz03019
]
FQU76_15480 (hrpA)
Enzymes [BR:
sqz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FQU76_15480 (hrpA)
Messenger RNA biogenesis [BR:
sqz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FQU76_15480 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
AAA_16
SLFN-g3_helicase
T2SSE
Zeta_toxin
AAA_25
ResIII
NACHT
PhoH
NTPase_1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QDY77687
UniProt:
A0A5B8J8N3
LinkDB
All DBs
Position
3628510..3632499
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AA seq
1329 aa
AA seq
DB search
MRSPSVSRGCDAGGRMSTSFADLQTLLAEAPLRDAHRLGRRLEGARRIRKPEARQAVLDE
IAAEAEKAAARTAARAGRVPEVTYPEQLPVSRKRDEILEAIRDHQVVIVAGETGSGKTTQ
IPKICLELGRGVRGMIGHTQPRRIAARTVAERVAEELRTPLGEAVGWKVRFTDQVNQDAT
FVKLMTDGILLAEVQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVIIT
SATIDPERFSRHFGDAPIIEVSGRTYPVEVRYRPLLEEDTEESAESDRDQITAICEAAEE
LMAEGKGDILVFLSGEREIRDTADALNKRNYRFTEVLPLYARLSHAEQHRVFQPHTGRRI
VLATNVAETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIERISQASANQRKGRCGRTS
DGICIRLYSEDDFDARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRD
GVQLLQELGAFDSEQKGSRGKAGQHLTPLGRKLSQLPVDPRLARMVVEAEKNGCVREVMV
IAAALSIQDPRERPADKQTQADQQHARFKDETSDFLAFLNLWRYVREQQKERGSASFRRM
CKQEYLNFLRIREWQDIYAQVRQVAKSMGIHVNEEDGPESGVHVSLLAGLLSHIGLKDTD
SKNEYLGARGAKFAVFPGSALFKKPPRLVMSAELVETSRLWARVNAKIEPEWVEPLAQHL
LKRTYSEPHWEKDQAAVMAYEKVTLYGVPIVAQRKVNYGRIDPETSRDLFLRNALVEGDW
RTHHKFFADNRRLLTEVEELEHRARRRDILVDDETLFDFYDQRVPAHIVSGAHFDSWWKQ
KRQEEPELLDFEREMLINEKAGAVTKDDYPDSWRQGRLKFRVTYQFEPGADADGVTVHIP
VQVLNQVTDEGFDWQIPGLREEVVIELIRSLPKPVRRHYVPAPNYAKAFLERAVPLQEPL
TATLARELKQLVGVPVDAEDFDLSKVPDHLKITFRIVDERRRRLAEAKDLESLRVKLRPK
ARQALSQAAAGAAGPTGESIERTGLTDWTIGALTKVFETRRAGQPVKAYPALVDNGDTVS
VRLFDTEAEQRAAMWRGTRRLILRNIPVNPAKFASDKLTNPQKLALSSNPHGSNQALFED
CATAAADKLIADHGGPAWDEESYRKLYEAVRADLVDVTVRTVSQVQQVLAAWQACERRLK
ATTSPALAANVADVRRQLDVLMPAGFVTLTGLGRLPDLMRYLVAADRRLTQMPSAVQRDT
SRMEKVQDMQDEYAWLLEQLPQGRPVPKSVLDIRWMIEELRVSYFAHALGTAYPVSDKRI
VKAIDAAAP
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atgcgttcgccctccgtttcccgggggtgcgatgctggaggccgtatgtctacttccttc
gccgaccttcagacgctgctggccgaggccccgttgcgggacgcccaccggctcggccgc
cgactcgaaggcgctcgccgcatccgtaagcccgaggcgcggcaggccgtgctggacgag
atcgccgccgaggcggagaaggcggcggcccggaccgccgcgcgcgccggccgggtgccg
gaggtgacctacccggagcagttgcccgtcagccgcaaacgggacgagatcctggaggcg
atacgggaccaccaggtcgtgatcgtcgcgggtgagaccggctccggcaagaccacccag
atcccgaagatctgcctggaactgggccggggcgtccggggcatgatcggccacacccag
ccgcgccggatcgcggcccgtacggtcgccgaacgcgtcgcggaggaactgcgcaccccg
ctgggcgaggccgtcggctggaaggtccgcttcaccgaccaggtgaaccaggacgcgacc
tttgtgaagctgatgacggacggcatcctgctcgccgaggtccagaccgaccgcgagctg
cgcgcctacgacacgatcatcatcgacgaggcgcacgagcggtccctcaacatcgacttc
ctgctcggctatctggcgcagctgctgccccggcggcccgatctgaaggtgatcatcacc
tccgcgacgatcgaccccgagcggttctcccgccacttcggcgacgccccgatcatcgag
gtcagcgggcggacctacccggtggaggtccgctaccgaccgctgctggaggaggacacc
gaagaatcggcggagagcgaccgggaccagatcaccgcgatctgcgaggccgccgaggag
ctgatggccgaggggaagggcgatatcctcgtcttcctctccggcgagcgcgagatccgc
gacaccgcggacgccctcaacaagcggaactatcgcttcaccgaggtgctgccgctctac
gcccggctctcccacgccgagcagcaccgggtcttccagccgcacaccggccgcaggatc
gttctggcgaccaatgtcgccgagacctcgctgaccgtccccggcatcaagtacgtgatc
gaccccggcaccgcccggatctcccgctacagccatcgcaccaaggtccagcggctgccg
atcgaacggatcagccaggccagcgccaaccagcgcaagggccgctgcggccgtacctcc
gacggcatctgcatccggctctactccgaggacgacttcgacgcccggccggagttcacg
gacgccgagatcctccgcaccaacctggcgtcggtcatcctccagatgacggccgccgga
ctcggcgatatcgagaagttccccttcatcgacccgccggaccaccgcaatatccgcgac
ggtgtgcagctgctccaggagctcggcgccttcgactcggagcagaagggctcccggggg
aaggcgggacagcacctcaccccgctcggccggaagctctcccagctccccgtcgacccc
cggctcgcccggatggtcgtcgaggccgagaagaacggctgtgtccgcgaggtgatggtg
atcgccgccgcgctctccatccaggacccgcgggagcggcccgccgacaaacagacccag
gccgatcagcagcacgcccgcttcaaggacgagacgtccgacttcctcgccttcctcaac
ctctggcggtacgtccgcgagcagcagaaggagcgcggctccgcgagcttccgccggatg
tgcaagcaggagtatctgaacttcctgcggatccgcgaatggcaggacatctacgcccag
gtgcggcaggtcgccaagtccatgggcatccatgtcaacgaggaggacgggcccgagtcc
ggtgtccatgtgtcgctgctggcggggctgctgtcgcatatcgggctgaaggacaccgac
tccaaaaacgagtatctgggggcccgcggcgccaaattcgccgtcttccccggctccgcc
ctcttcaagaagccgccccggctggtgatgtccgccgagctggtggagacctcccgcctc
tgggcccgggtcaacgcgaagatcgaacccgagtgggtcgaaccgctggcccagcacctg
ctgaagcggacgtactcggaaccgcactgggagaaggaccaggccgcggtgatggcgtac
gagaaggtcaccctgtacggggtgccgatcgtcgcccagcggaaggtcaactacggccgg
atcgaccccgagacctcccgggacctcttcctccgcaacgccctggtggagggcgactgg
cggacccaccacaagttcttcgccgacaaccgcagactgctgaccgaggtcgaggagctg
gagcaccgggcccggcgccgggacatcctcgtcgacgacgagaccctcttcgacttctac
gaccagcgggtgcccgcgcacatcgtctccggcgcccacttcgactcctggtggaagcag
aagcgccaggaggagcccgagctgctcgacttcgagcgcgagatgctcatcaacgagaag
gccggcgcggtcaccaaggacgactatccggactcctggcgccagggacggctgaagttc
cgggtgacgtaccagttcgagcccggcgccgacgcggacggtgtgaccgtccacatcccc
gtccaggtgctcaaccaggtcaccgacgagggcttcgactggcagatccccggactgcgc
gaagaggtcgtcatcgagctgatccgctccctgccgaagccggtgcgccggcactacgta
cccgccccgaactacgcgaaggcgttcctggagcgggccgtgcccctccaggagccgctg
acggcgaccctggcgcgggagctgaagcagctggtcggcgtcccggtcgacgccgaggac
ttcgacctgtccaaggtccccgaccacctcaagatcaccttccggatcgtcgacgagcgg
cgccgcaggctggccgaggcgaaggatctggagtccctgcgggtgaaactgcgccccaag
gcccgccaggccctctcccaggccgccgcgggggccgcggggcccacgggcgagtccatc
gagcgcacgggcctcacggactggaccatcggcgccctgacgaaggtcttcgagacccgg
cgggccggacagccggtgaaggcgtacccggcgctcgtcgacaacggcgacaccgtctcc
gtacgcctcttcgacaccgaggccgaacagcgggccgccatgtggcggggcacccgccgg
ctcatcctgcgcaacattcccgtgaacccggccaagttcgcctcggacaagctgaccaac
ccgcagaagctggcgctctccagcaacccccacggctccaaccaggccctcttcgaggac
tgcgcgaccgccgcggcggacaagctgatcgccgaccacggcgggcccgcgtgggacgag
gagtcctaccgcaagctgtacgaggcggtccgcgccgatctcgtcgatgtcaccgtccgc
acggtctcccaggtccagcaggtgctggcggcctggcaggcctgcgagcggcggctcaag
gccaccaccagccccgcgctggcggccaacgtcgccgatgtgcgccgccagttggacgtg
ctgatgccggcgggcttcgtcaccctcaccggactggggcggctccccgacctcatgcgc
tatctggtcgccgcggaccggcggctgacccagatgccgtcggcggtccagcgcgacacc
tcgcgcatggagaaggtccaggacatgcaggacgagtacgcctggctgctggagcagttg
ccccaggggcggccggtgccgaagagcgtcctcgacatccgctggatgatcgaagagctg
agggtcagctacttcgcgcatgcgctggggaccgcgtatccggtgtcggacaagcggatc
gtgaaggcgatcgacgcggcggcgccgtag
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