Sphingomonas radiodurans: LLW23_00025
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Entry
LLW23_00025 CDS
T08717
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
srad
Sphingomonas radiodurans
Brite
KEGG Orthology (KO) [BR:
srad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srad03016
]
LLW23_00025 (rnd)
Enzymes [BR:
srad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LLW23_00025 (rnd)
Transfer RNA biogenesis [BR:
srad03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LLW23_00025 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
WBH16563
LinkDB
All DBs
Position
complement(4382..5557)
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AA seq
391 aa
AA seq
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MHVHPLITDSAALANLCARLADAPFVCVDTEFMRENTFWPELCLIQIADTEEAAAIDPMA
LGLDMQPLLDLLVNNEDVLKVFHAGGQDLEIIYNLTGKTPYPLFDTQVAAMALGQGEQIG
YSNLVDSWLGIQIDKGARFTDWSRRPLDVRQVDYAIGDVTHLSNIFPRMLERLKKTGRGA
WLDQEMERLGDPANYANDPDLAWKRVRISGRRPDVLGRLKAIARWRELEARSKDLPRGRI
VKDETVADLAGHPPKKQADLVKVRGLSATWGTNDIGKRLLAAIESAEPMSMEEMPPREDR
KPGLGKEGALVADLLKLLLKIRARDIDVAPRLLARGEELEALAAGQRDNLAMLTGWRFDQ
FGHEALDLVEGRLGFAVVEGKLKMTRIDVNT
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgcatgttcatccattgatcaccgacagtgcggcgctcgccaatctttgcgctcgtctc
gccgatgctccgttcgtttgcgtcgatacggaattcatgcgcgagaacacgttctggccc
gagctgtgcctgatccagatcgccgataccgaggaggcggcggcgatcgatccgatggcg
ttggggctcgacatgcagcccctgctcgacctgctggtgaacaacgaggatgtgctcaag
gtcttccacgccggcgggcaggatctggagatcatctacaacctgaccggcaagacgccc
tacccgctgttcgacacgcaggtggcggcgatggcactcggccagggtgagcagatcggc
tattcgaacctggtcgacagctggcttggcatccagatcgacaagggtgcgcggttcact
gactggtcgcgtcgcccgctcgacgtacggcaagtcgattacgcgatcggtgacgtaacg
catctgtcgaacatctttccgcgtatgctggagcgattgaagaagaccgggcgcggcgcg
tggctcgatcaggaaatggagcggctcggcgatccggcgaattacgccaacgatcccgac
ctggcgtggaagcgcgttcggatctccgggcgtcggcccgacgtgcttgggcggctcaag
gcgattgcgcggtggcgcgagctggaagctcgctcgaaggatctgccgcgtggccggatc
gtcaaggacgaaacggtcgccgatctggcgggtcatccgccgaagaagcaggccgatctg
gtgaaggtgcgcggcctgtccgccacctggggcacgaacgatatcggcaagcggctgttg
gctgctatcgagagcgcggagccgatgtcgatggaggagatgcccccgcgcgaggaccgt
aagcctggcctcggcaaggaaggcgcacttgttgcagacctgctgaagctactgctcaag
atccgcgcgcgcgatatcgacgtcgcgccgcggctgctggcgcgcggcgaggagctggaa
gctcttgccgccgggcagcgcgataatctcgcgatgctgacgggttggcgcttcgaccag
ttcgggcacgaggcgctcgacctggtcgaggggcggctgggctttgcggtggttgagggg
aagctgaagatgacgcggatcgacgttaatacttga
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