Sphingomonas radiodurans: LLW23_03300
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Entry
LLW23_03300 CDS
T08717
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
srad
Sphingomonas radiodurans
Pathway
srad02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
srad00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LLW23_03300 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srad03021
]
LLW23_03300 (rpoD)
Transcription machinery [BR:
srad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LLW23_03300 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WBH17160
LinkDB
All DBs
Position
677271..679292
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AA seq
673 aa
AA seq
DB search
MAKVNGSGGDEGGETADAPLIDLNDAEIKKLVARAKKRGYITYDQLNSALPQDQMSSDQL
EDIMSALNEMGVNIVENEEAGEDGDEQEAAEDEVETVDADQENAPVVEKKKETIDRTDDP
VRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIDWSTQLNEGTMQ
LREILDLDAMLSKGPSAEQVENAEDDSGEISEKTAGASFKEEAEPEEASADEDDDMTERR
TPRPSDDEEEDNTLSLAQMEETLKPMALEKFANITAIYKKFSKMQQGRLGAMGGGSELSA
GDERKYHKLREELTAEVESVQFHNAKIEYLVDQLYSYNRRLTALGGQMLRLAERHKVNRK
DFLDRYMGHELDDTFLATVTGLDKKWTAFATNEGDAVDRIRIEISEISQQTGMALGEFRR
IVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTP
EEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQANL
KETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKH
PSRSRKMRSFLDQ
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggttaacggtagcggtggcgacgaaggcggcgaaacggccgatgcaccgctg
atcgacctgaacgatgcggaaataaagaagctggtcgcacgcgcgaagaagcgcgggtac
atcacctatgatcagctcaactccgcattgccgcaggatcagatgtcgagcgaccagctc
gaggacatcatgtccgcgctcaacgaaatgggcgtgaacatcgtcgagaacgaggaagcc
ggggaagacggcgacgagcaggaagccgccgaggacgaggtcgagacggtcgacgccgac
caggaaaacgcgcccgtcgtcgaaaagaagaaggaaacgatcgaccgcaccgacgatccg
gtgcggatgtatctgcgcgagatgggcgccgtcgagctgctcagccgcgagggcgagatc
gccatcgccaagcggatcgaagccggccgggacacgatgatcctcgggctgtgcgaatcg
ccgatcaccttcaacgcgatcatcgattggtcgacccagctcaacgaaggcacgatgcag
ctgcgtgagatcctcgatcttgacgcgatgttgtcgaagggcccgtcggccgagcaggtc
gagaacgccgaggacgacagcggcgagatcagcgaaaagaccgccggcgcatcgttcaag
gaagaagccgagccggaagaggcatcggccgacgaagacgatgacatgaccgagcggcgc
acgccgcgtccgtcggacgacgaagaggaggataacaccctcagcctcgcgcagatggag
gaaacgctcaagccgatggcgctcgagaagttcgccaacatcacggcgatctataaaaaa
ttctcgaagatgcagcagggccggctcggcgcgatgggcggcggcagcgagctgtcggcg
ggcgacgagcgcaagtaccacaagctgcgcgaggagctgaccgccgaggtcgagagcgtc
cagttccacaacgccaagatcgaatatctcgtcgatcagctatacagctacaaccggcgc
ctgaccgcgctcggcggccagatgctgcgcctcgcggaacgccacaaggtgaaccgcaag
gacttcctcgatcgctacatgggccacgagctcgacgacacatttctcgcgaccgtcact
gggctcgacaagaagtggaccgcgttcgcgaccaacgagggcgacgccgtcgatcgcatc
cgtatcgagatttcggaaatctcgcagcagaccggcatggcgctcggcgagttccgccgc
atcgtcaacatggtgcagaagggcgagcgcgaggcacgcatcgccaagaaggaaatggtc
gaggcgaacctgcggctcgtgatctcgatcgccaagaaatacaccaaccgcgggctgcag
ttcctggatctgatccaggagggcaacattggcctgatgaaggcggtcgacaagttcgag
tatcggcgcggctacaagtttagcacgtacgccacgtggtggatccgccaggcgatcacc
cgctcgatcgccgatcaggcgcgcacgatccgcatcccggtccacatgattgagacaatc
aacaagctggtccgtaccagccgccagttcctccacgagcagggtcgcgagcccacgcca
gaggaaatggccgagcgcctgagcatgccgctcgaaaaggtccgcaaggtgatgaagatc
gccaaggagccgatcagcctcgaaacgccgatcggcgacgaggaggattcgcacctcggc
gatttcatcgaggacaagaatgccgtcatcccagtcgacgcggcgatccaggccaacctc
aaggaaaccgtgacccgcgtcctcgcctcgctcaccccgcgcgaagagcgtgtgctgcgc
atgcgcttcgggatcggcatgaacaccgatcacacgctcgaagaggtcggccagcagttc
tcggtgacgcgcgagcgtatccgccagatcgaggcgaaggcgctccgcaagctgaagcac
ccgagccgcagccgcaagatgcgcagcttcctcgatcagtaa
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