Sphingomonas radiodurans: LLW23_05270
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Entry
LLW23_05270 CDS
T08717
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
srad
Sphingomonas radiodurans
Pathway
srad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLW23_05270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srad03019
]
LLW23_05270
03009 Ribosome biogenesis [BR:
srad03009
]
LLW23_05270
Enzymes [BR:
srad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LLW23_05270
Messenger RNA biogenesis [BR:
srad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LLW23_05270
Ribosome biogenesis [BR:
srad03009
]
Prokaryotic type
rRNA processing factors
LLW23_05270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WBH18235
LinkDB
All DBs
Position
1084880..1087618
Genome browser
AA seq
912 aa
AA seq
DB search
MLIDARHREETRVAVVKGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFIDYGGN
RHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEEAKLRAEQEAADDDDGEPGDYDADE
HAEDDGGFEDDAADDGEHDSEQEGEERPVPPAAGINDDQVEALRQRRMNLRRRYKIQDVI
RRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNSSDRKRLKS
IMAELALPPSMGCIVRTAGLSRTRTEIKRDFDYLARLWDGIRENTLTSAAPALIYGDSDL
IKRAIRDIYNKDIDEVIVEGDEGYRQAKEFMRLLMPSHAKKVQHYSDPIPLFQRCHVEDQ
LAAMYHPVVQLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAHEIARQL
RLRDMAGLVVIDFIDMDNSSNVRKVEKAMKEALKNDRARIQVGRISSFGLMEMSRQRLRT
GVLEASTRACPHCEGTGLVRTASSAGLSALRLIEDEAARGRGSLLTLRASVEAAVYVLNR
KRADIAEIEDRYGVTVEILPDGEQEGARMSVEASGPPPAYAPKFDPPVEEIEDDIPDEIE
EEEEEEVFAEDEAPRAQEARSEEPREGGRKRRRRRGRRGRTNAEGEELPASNADLADGDE
EADEAGEPGDVEASDDGAATSEEGEGPRRRRNRRGRRNRRRDGTVEGEAQAGEVAGEAGD
ESASDDVVADAEPEAPVEAEPAVVPVAEAEPAPPKTRRRPRAKAAVAQAAAADAPVVETP
AAIDIPGIEAIAPATEEAPPAAPKRTRRKKAAPEAEAVAEAPAAAEPAAEATAKPKRTRR
KKADVPVVDVPSADLPAPEATETATLAANDADGATPADDAAEGPADSADAGDTIDGGDGS
PRRGWWQRTFGA
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgacgcacgccaccgggaagaaacccgcgtggccgtcgtcaaaggaaatcgg
atcgaagagtttgatttcgaaagtgccgagcgcaagcagctcaaggggaatatctacctt
gccaaggtgacgcgggtcgagccgtcgctccaggcggccttcatcgattacggcggcaac
cgccacggcttcctcgccttttccgaaatccacccggattattatcagatccccaaggag
gatcgcgaggcgctgctgcgcgaggaggccgagcacgccgccgaggaagccaagctgcgc
gccgagcaggaagccgctgacgacgatgatggcgagcctggcgactatgacgccgacgag
cacgccgaggacgacggcgggttcgaggacgatgcggccgacgacggcgagcatgacagc
gagcaggaaggcgaagagcgcccggtgccgcctgccgcgggcatcaacgacgatcaggtc
gaggcattgcgccagcgccgcatgaacctgcgccgccgctacaagattcaggacgtgatc
cgccgccgtcaggtgctgctggtccaggtcgtgaaggaagagcgcggcaacaagggcgcg
gcactgacgacctatctgtcgctcgccggccgctattgcgtgctgatgcccaacacgtcg
cacggcggcgggattagccgcaagatcagcaattcgtccgatcgcaagcgcctgaagtcg
atcatggccgaactggcgctgccgccatcgatgggctgcatcgtgcgcaccgccggcctc
agccgcacccgcaccgagatcaagcgcgacttcgactatctcgcccgcctgtgggacggg
atccgcgagaacacgctgaccagcgcagcgccggcgttgatctacggcgattcggatctc
atcaagcgtgcgatccgcgacatctacaacaaggacatcgacgaggtgatcgtcgagggc
gacgaaggctatcgtcaggccaaggaattcatgcggctgctgatgcccagccacgccaag
aaggtgcagcattacagcgatccgatcccgctgttccagcgctgccacgtcgaggatcag
ctcgccgcgatgtaccatccggtggtgcagctgaagtcgggcggctatctggtcattaac
ccgaccgaggcgctcgtctcgatcgacatcaactccggccgctcgacgcgcgagcacaat
atcgagcagaccgccaccgcgaccaacctcgaagccgcgcatgaaatcgcccgccagttg
cgcctgcgcgacatggctggcctcgtcgtcatcgacttcatcgacatggacaacagctcc
aatgtccggaaggtcgagaaggcgatgaaggaggcgctcaagaatgatcgcgcccgtata
caggttggccgcatctcgtcgttcggcctcatggaaatgagccgccagcgcttgcgcacc
ggcgtgcttgaggcatcgacccgtgcctgcccgcattgcgaaggaaccgggctcgtccgt
accgcatcgtcggctggccttagcgcattgcggctgatcgaggacgaagcggcccgcggc
cgtggctcgctgctcacattgcgcgccagcgtcgaggcagcggtgtacgtgctcaaccgc
aagcgcgccgacattgccgagatcgaggatcgctacggcgtgacggtcgagatcctgccc
gatggcgagcaggaaggcgctcgcatgtcggtcgaggcgtccggcccgccgccggcctat
gcgcccaagttcgatccgcccgtcgaggagatagaggacgacattcccgacgagatcgag
gaggaagaggaagaggaagtcttcgccgaagacgaggcaccgcgcgcgcaggaagcacgc
agcgaggaaccgcgtgaaggcggccgcaagcgtcgccgccgccgcggtcggcgtggccgc
accaatgccgagggcgaggaactgccggcatcgaacgccgatctggccgacggtgacgag
gaagcggacgaagctggcgagccaggtgacgtcgaagccagcgatgacggcgccgccacg
agcgaggaaggcgaaggcccccgccgccgtcgcaaccgtcgcggccgtcgcaatcgccgt
cgtgatggcacggtagagggtgaagcacaggcaggcgaagtcgccggtgaagctggtgac
gagtcggcgtcggacgatgtcgtcgccgatgctgaacccgaagcgcccgtcgaggctgag
cctgcggtcgtacccgtagccgaagctgagcctgcgccgccgaaaacgcgccgtcgtccc
cgcgccaaggcagcggtcgcgcaagcggctgccgccgacgcccccgtggtcgagacgcca
gcggcgatcgatatcccgggcatcgaagcgatcgcgccggccaccgaggaggcaccaccc
gccgcccccaagcgcacccgtcgcaagaaggcggcacccgaagccgaagctgtagccgag
gctccggcagcggcagaacccgctgcggaggcgactgccaagccgaagcgcacgcgccgc
aagaaggccgacgtgcccgtagtcgacgtgccatcggccgatctgccggcgcccgaggca
actgaaacggcgacgctcgccgcgaacgatgccgatggcgccacaccggccgatgatgcc
gccgaaggcccggccgatagtgccgatgccggcgacacgatcgacggcggcgatggctcg
ccacgccgcggctggtggcagcgcaccttcggggcttga
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