Sphingomonas radiodurans: LLW23_05500
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Entry
LLW23_05500 CDS
T08717
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
srad
Sphingomonas radiodurans
Pathway
srad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLW23_05500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srad03019
]
LLW23_05500
Messenger RNA biogenesis [BR:
srad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LLW23_05500
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RNase_J_C
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_6
DUF7205
SPT2
Motif
Other DBs
NCBI-ProteinID:
WBH18238
LinkDB
All DBs
Position
complement(1140911..1142548)
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AA seq
545 aa
AA seq
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MSKNDELLFCALGGSGEIGMNVNLYGTRGRWVMVDCGVTFADHAYPGIDLVLPDLSFIED
RLEQLEGIVITHGHEDHIGALPYLADDLGVPIYATPFTAGLIRHKLDEERIADRIDLRVI
QPGAPFKVGPFGFEFVPLMHSIPESNALIIETAAGRIFHTGDWKLDDAPVIGKPVSAAQM
TAIGDRGIDVLVCDSTNVFNVEASGSESDVRTGLGEAIAKARGRVMVTTFASNASRIQTL
GEVAKETGRALCVAGRSLDRIIKVARACGYLRDLPELVTADAAMRMPRDKVLIIATGGQG
EPRAALARVAEGSHQIRLDEGDTVIFSSKEIPGNEVAIGRIQNILAGRGVLMVTEKQAHV
HVSGHPGRPELAKMYSWLRPELLIPVHGEMRHLMEQARYGLSEGIPQAIVQTDGDMIRLA
PGKPQKIGNVPVGRLVLDGDVILPADGATINERRRLGVNGQISVAVAVSREGRLAGRPQV
RFQGVPVEEERSAFIAEAEDAVEEAARGKSRDRDRLREDIRLAVRRCATRWTGKKPVVDV
LVVEV
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atttccaagaacgacgaacttctcttctgcgccctcggcggctccggcgagatcggcatg
aacgtcaacctatatggcacgcgtggccgctgggtgatggtcgattgcggcgtgaccttt
gccgatcatgcctatcccggcatcgacctggtgctgcccgacctgtcgttcatcgaggat
cggctcgagcagctcgaaggcatcgtcatcacgcacgggcatgaggatcatatcggcgcg
ctgccgtatctcgccgatgatctcggggtgccgatatacgccacgccattcaccgccggg
ctgatccgccacaagctggacgaggagcggatcgccgatcgcatcgacctgcgcgtgatc
cagccgggcgcgccgttcaaggtagggccattcgggttcgaattcgtgccgctgatgcat
tcgatccccgaatcgaacgcgctgatcatcgagacggcggcgggccgcatattccacacc
ggcgactggaagctcgacgatgcgccggtgatcggcaagccggtgagcgcggcgcagatg
acggcgatcggcgatcgcggcatcgacgtgctcgtgtgcgattcgacgaacgtgttcaac
gtcgaggcatcgggatcggaaagcgacgtgcgcaccgggctcggtgaagcgatcgccaag
gcacgtggccgcgtgatggtgacgacattcgcgtcgaacgcctcgcgcattcagacgcta
ggcgaagtggcgaaggaaaccgggcgcgcgctgtgcgtggccggacgctcgctcgatcgc
atcatcaaggtggcgcgggcatgcggctatctgcgtgacttgcccgaattggtcaccgcc
gacgccgcgatgcggatgccgcgcgacaaggtgctgatcatcgccaccggcggccaaggc
gagccgcgcgcggcgctcgcgcgggttgccgagggcagccaccagatccggctcgacgag
ggcgacacggtgatcttctcgtcgaaggagattcccggcaacgaagtggcgatcggccgc
attcagaatatcctcgccggccgcggtgtcctgatggtcaccgagaagcaggcgcacgtt
cacgtttctggccatccaggccggccggaattggccaagatgtacagctggctgcgcccc
gagctgctgatcccggttcatggcgagatgcggcatctgatggagcaggcgcgctacggc
ctgtccgaaggcattccacaagcgatcgtccagaccgatggcgacatgatccggctcgcg
ccgggcaagccgcagaagatcggcaacgtgccggtcggccggttggtgctcgacggtgac
gtgatcctgccggccgatggtgcgacgatcaacgaacggcggcggcttggcgtgaatggc
cagatctcggttgcggtcgcggtgtcgcgcgaggggcggctggcgggtcgcccgcaggtg
cgcttccaaggcgtgccggtcgaggaggagcgcagcgcgttcatcgccgaggccgaggat
gcagtggaggaggccgcgcgcggcaagtcgcgcgatcgcgatcggctgcgcgaggacatc
cgccttgccgtgcgtcgctgcgccacgcgctggacgggcaagaagccggtggtcgacgta
ctcgtcgtcgaggtctga
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