Sphingomonas radiodurans: LLW23_07625
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Entry
LLW23_07625 CDS
T08717
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
srad
Sphingomonas radiodurans
Pathway
srad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLW23_07625 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srad03019
]
LLW23_07625 (pnp)
03016 Transfer RNA biogenesis [BR:
srad03016
]
LLW23_07625 (pnp)
Enzymes [BR:
srad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LLW23_07625 (pnp)
Messenger RNA biogenesis [BR:
srad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LLW23_07625 (pnp)
Transfer RNA biogenesis [BR:
srad03016
]
Prokaryotic type
tRNA degradation factors
LLW23_07625 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
S1_2
LPD3
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
WBH17952
LinkDB
All DBs
Position
complement(1580911..1583265)
Genome browser
AA seq
784 aa
AA seq
DB search
MFDTKKVSIEWGGQTLTLETGRVARQADGAVLATLGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKFSSAGRIPGGFFKRERGATERETLVSRLIDRPLRPLFPEGFYNEINCIAQVMSY
DGQNEPDLLALIAASAAMTLSGVPFMGPIGAARVGYKDGEYQLNPSDADVAAGELDLVVA
ATHDAVMMVESEAKELSEDVMLGAVMFAHKASQQVIDAIIKLAEQAAKEPWELNSGADLS
AHKTKLKKLIGKDMEAAYKLTDKQARQTAINDARAKAREAFADLKESNPSEYLGTLKLVK
KVEAEIVRGAILKTGRRIDGRDTKTVRPISAEVHFLPRAHGSALFTRGETQTIATTTLGT
RDAEQMIDGLGGLTYQHFMLHYNFPPYSVGEVGRFGAPSRRDIGHGKLAWRALHAVLPSK
EEFPYTIRVTSDITESNGSSSMATVCGGSLALMDAGVPIKRPVSGIAMGLILEGKDFAVL
SDILGDEDHLGDMDFKVAGTSEGITSLQMDIKIAGITEEIMRVALAQAHEGRAHILEEMN
KALGETRGELSAHAPRIETLTVDKAKIRDIIGTGGKVIREIVATTGAKVDIDDEGVVKVS
SSDHSQIEAAIAWIRGIVEEAEVGKVYDGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNER
VEKPGDVVSEGQAVKVKVLEIDPRGKVRLSMRVVDQETGAELEDTRPAREPRPERSGGGD
RGPRREGGGGGDRGPRSGGGDRGPRGSGGGDRGPRRDRGPRPEGNKDEGAAPEFAPAFLT
NDRD
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgttcgataccaaaaaggtaagcatcgagtggggcggccagacgctgacgctcgaaacg
ggccgcgttgcccgccaggctgacggcgcggttctcgcgacgctcggcgaaacggtcgtg
ctgtgcgccgtcaccgccgccaagtcggttaaggaagggcaggatttcttcccgctcacc
gtccactatcaggaaaaattctcgtcggccggtcgtatcccgggtggcttcttcaagcgt
gagcgtggcgccaccgagcgcgagacgctcgtcagccggctgatcgatcgcccgctgcgc
ccgctgttccccgaaggcttctacaacgagatcaactgcatcgcgcaggtgatgagctat
gacggccagaacgagcccgatctgctggcgctgattgccgcatcggccgcgatgacgctg
tcgggcgttccgttcatgggcccgatcggcgccgcgcgcgtcggctacaaggatggcgaa
tatcagctcaacccgtcggacgccgatgtcgccgccggtgagctcgacctggtcgtcgcc
gccacgcacgacgcggtgatgatggtcgaatcggaagccaaggagctgtccgaggacgtg
atgctcggcgccgtgatgttcgcgcacaaggcctcgcagcaagtgatcgacgcgatcatc
aagctggccgaacaggccgccaaggagccgtgggagctgaactcgggtgccgatctgtcg
gcgcacaagacgaagctcaagaagctgatcggcaaggacatggaggcagcctacaagctg
accgacaagcaggcccgccagaccgcgatcaacgacgcgcgcgccaaggcacgcgaggcg
ttcgctgacctcaaggaaagcaacccgtcggaatatctcggcacgctgaagctggtgaag
aaggtcgaggccgaaatcgtccgcggcgcgatcctcaagaccggccgtcgcatcgacggg
cgtgacacgaagacggtccgtccgatctcggcggaagttcacttcctgccgcgcgcgcac
ggctcggcgctgttcacccgcggcgagacgcagacgatcgccaccacgacgctcggcacg
cgcgatgcggagcagatgatcgatggcctgggtggtctcacctaccagcacttcatgctg
cactataacttcccgccgtactcggtcggtgaagtcggccgcttcggcgcgccatcgcga
cgtgacatcggccatggcaagctcgcctggcgcgcgctgcatgccgtgctgccgtcgaag
gaagaattcccgtacacgatccgcgtcaccagcgacatcacggagagcaacggctcctcg
tcgatggcgacggtctgcggcggcagcctcgcgctgatggatgccggcgtgccgatcaag
cgccccgtctcgggcatcgcgatgggccttatcctcgagggcaaggacttcgccgtcctc
tcggacatcctgggcgacgaggatcacctcggcgacatggacttcaaggttgccggcacc
agcgaaggcatcaccagccttcagatggacatcaagatcgccggcatcaccgaagagatc
atgcgtgtcgcactggcgcaggcgcatgaaggccgcgcgcacatcctggaagaaatgaac
aaggcgctcggcgagacccgtggcgaactctcggcgcatgcaccgcgcatcgagacgctg
acggtcgacaaggcgaagatccgcgacatcatcggcaccggcggcaaggtgatccgcgag
atcgtcgccaccaccggcgcgaaggtcgacatcgacgacgagggcgtggtcaaggtcagc
tcgtccgatcattcgcagatcgaggcggcgatcgcctggatccgcgggatcgtcgaggag
gccgaggtcggcaaggtctatgacggcaaggtcgtcaacatcgtcgatttcggcgcgttc
gtgaacttcatgggcggcaaggacggtctcgtccatgtgtccgaaatgaagaacgagcgg
gtcgagaagccgggtgacgtcgtgtccgaaggccaggccgtgaaggtcaaggtcctcgag
atcgatccgcgcggcaaggtccgcctgtcgatgcgcgtcgtcgatcaggaaaccggcgcc
gagctggaagatacccgtcctgcccgcgagccgcgcccggagcgcagcggcggcggtgat
cgtggcccgcgtcgcgaaggcggcggtggcggtgatcgtggcccgcgcagcggcggcggc
gatcgcggtccgcgcggcagcggcggcggcgaccgcggcccccgccgcgatcgcggcccg
cgtcccgaaggcaacaaggacgagggcgcagcgcccgagttcgccccagccttcctgacg
aacgatcgcgattaa
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