Sphingomonas radiodurans: LLW23_14180
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Entry
LLW23_14180 CDS
T08717
Name
(GenBank) RNB domain-containing ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
srad
Sphingomonas radiodurans
Pathway
srad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLW23_14180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srad03019
]
LLW23_14180
03016 Transfer RNA biogenesis [BR:
srad03016
]
LLW23_14180
Enzymes [BR:
srad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LLW23_14180
Messenger RNA biogenesis [BR:
srad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LLW23_14180
Transfer RNA biogenesis [BR:
srad03016
]
Prokaryotic type
tRNA degradation factors
LLW23_14180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
PF0610-like_N
FaeA
LexA_DNA_bind
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
WBH15941
LinkDB
All DBs
Position
3016541..3018871
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AA seq
776 aa
AA seq
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MMHKPKAGLPSREQIIEFITTSDTPAGKREIARAFGLSAQDKIALKALLKDMADEGLIDS
APGRAFHKMGGVPKVTVLRIVDVDDNGTIWAVPERWEADVPPPRIRVRERKRGELGVGTR
VLARTEEAGNGWIAHPMKALAPSAEQMIGVLRGEGDRLWLQGVEKKERREYAVSDAGGAQ
AGDLVLAERAGRPPRITAKVIERLGDPFAPRSFSLIAIHRHEIPHVFEEETLAEAARMAR
QPLGEGREDLTHLPIVAIDPADARDHDDAIWAAPDDDPANEGGWRAIVAITDVSFYVRPG
SALDREARRRGNSVYFPDRVVPMLPEVLSADVCSLKEGVDRAALACHMQVTKAGTLKSWR
FTRATVRIAANIAYEDAQAMIDGILPELRSGRGTAGEAGGGGEEPQAGALVTAPLPDPLP
AGGEREIAAALRNLWACWAALLAARDKREPLALDLPERQVALDEKGRLLSVAPRERLDAH
RVVEDYMIAANVAAAKALEAKKAPVMYRIHEPPAREKLVALKEYLETFDAPFALGQVIKP
ATFNHIIERIGDADFRPQVMEQILRSQTQAYYGPGNHGHFGLSLGSYAHFTSPIRRYADL
LVHRALTSSYALGPGGLNGDEDFERLGETISKLERRAMEAERETIDRYVAAFLSHRVGEI
VDARITGIQNFGFFATVEGVGGDGLMPISDLGGEYFRFDEAGRRLVGETSGEQYTLGQRL
KLRLAEANPVSGALRYELPDGKGARPPRGGDRDHRGPRELKRRGRPGNIRHQGRRK
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgatgcacaagccgaaggccgggctgccgagccgcgaacagatcatcgaattcatcacc
accagcgatacgcccgccggcaagcgcgagatcgcgcgcgccttcgggctgagcgcgcag
gacaagatcgcgctgaaggcgctgctcaaggacatggccgatgaagggctgatcgacagc
gcgccgggtcgcgccttccacaagatgggcggcgtgcccaaggtgacggtgctgcgcatc
gtcgatgtcgacgacaatggcacgatctgggctgtgcccgagcgctgggaagccgacgtc
ccgccgccgcgaatccgcgtgcgcgagcgcaagcgcggcgaactcggcgtcggcacgcgg
gtcctcgcgcgcaccgaggaggccgggaacggctggatcgcgcacccgatgaaggcgctc
gcgccctcggccgagcagatgatcggcgtgctgcgcggggagggggatcggctctggctc
cagggcgtcgagaagaaggagcggcgcgaatatgccgtgtccgacgcgggcggcgcgcag
gcgggcgatctcgtgctggccgaacgcgccggccgcccgccgcggattaccgcaaaggtg
atcgagcggctcggcgacccgttcgcgccgcgcagcttctcgctgatcgcgatccaccgc
cacgaaatcccgcacgtctttgaagaagagacgctggccgaggcggcacgcatggcacgg
cagccgctcggcgagggacgcgaggatctcacgcacctgccgatcgtcgcgatcgacccc
gccgatgcgcgcgatcacgacgacgcgatctgggccgcgcccgatgacgatcccgccaac
gaaggcggctggcgcgctatcgtcgccatcaccgacgtcagcttctacgtccgccccggc
agcgcgctcgaccgcgaggcgcggcgccgcggcaattcggtctacttccccgatcgcgtc
gtgccgatgctgcccgaggtgctgtcggcggacgtgtgttcgctcaaggaaggcgtcgat
cgcgccgcgctcgcctgccacatgcaagtcacgaaggcgggcaccctcaagtcgtggcgc
ttcacccgcgccacggtgcggatcgcggcaaacatcgcctatgaagacgcacaggcgatg
atcgacggcatcctccccgagcttcgctcggggagggggaccgccggcgaagccggtggt
ggaggggaagagccacaagcgggcgcgctcgtgactgcccctctccccgaccctctcccc
gcaggcggggagagggagatcgctgccgccctccgtaacctctgggcctgctgggccgcg
ctccttgccgcgcgcgacaagcgtgaaccgctcgcgctcgatctccccgaacgccaggtc
gcgctcgacgaaaagggccgcttgctatcggtcgccccccgcgagcggctcgacgcccac
cgcgtcgtcgaggattacatgatcgccgccaacgtcgccgccgccaaggcgctcgaggcg
aagaaggcgccggtaatgtaccgaattcacgagccgcccgcgcgcgagaagctggtcgcg
ctgaaagaatatctcgaaaccttcgatgcgcccttcgcgctcggccaggtgatcaagccg
gcaaccttcaaccacatcatcgaacgcatcggcgacgccgatttccgcccgcaagtgatg
gagcagatcctccgctcgcagacccaggcctattacggccccggcaaccacggccatttc
ggcctgtcgctcggctcctacgcgcacttcacctcgccgatccgccgctacgccgatctg
ctggtgcatcgcgcgctgaccagcagctatgcgctcggtccgggcgggctcaacggcgac
gaggatttcgagcggctcggcgagacgatcagcaagctcgaacgccgcgcgatggaggcc
gagcgcgagacgatcgaccgctatgttgctgcgttcctctcgcaccgcgtcggcgagatc
gtcgatgcgcggatcaccggcatccagaacttcggcttcttcgccaccgtcgagggcgtc
ggcggcgacgggctgatgccgatcagcgacctgggcggcgaatatttccgcttcgacgaa
gccggccgacggctcgtcggcgaaacgagcggcgagcaatatacgctcggccagcggctc
aagctgcggctcgccgaggccaacccggtctcgggcgcgctgcgctacgagctgcccgac
ggcaagggtgcccgcccgccgcgaggcggcgatcgtgatcaccgcggcccgcgtgagttg
aagcggcgcgggcgaccgggcaatattcggcatcaggggcggagaaagtag
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