Sphingomonas radiodurans: LLW23_14630
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Entry
LLW23_14630 CDS
T08717
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
srad
Sphingomonas radiodurans
Pathway
srad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LLW23_14630 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srad03400
]
LLW23_14630 (mfd)
Enzymes [BR:
srad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LLW23_14630 (mfd)
DNA repair and recombination proteins [BR:
srad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LLW23_14630 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
Helicase_C
DEAD
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WBH16028
LinkDB
All DBs
Position
complement(3107378..3110842)
Genome browser
AA seq
1154 aa
AA seq
DB search
MPNLQTILAATAPLTLSGVPTGFLPSVLADLARAAKTRAVFIAPDEAAMRAIASTAHYFA
PELEIVEFPAWDCLPYDRASPTLRVMAERIGALHRLQHKLKAPQLVLTTVNAAAQRTLTP
FRIRQLVATLQPGERIARDKLATLLSANGYVRTDTVHDSGEFAVRGGLVDLFPSGETHAL
RLDFFGDEIESVRTFDPADQRTTGKLPGFTLLPASEALLDDDSIKRFRSRYRETFGATAT
GDPLYQAISDGRRLAGMEHWLPLFEEKLATLFDHLGDDALIVRDHGVKAAGDSRFESVAD
YYENRKRAEAAQPGSYRALPAKTLYLAPKEWDEALVTTAAHVTTPFHEPESKTVIDFGVD
GPRDFGPERMAGNTGGNVYEAVVDHLAKLRRDGRTPVLASYSIGARDRLGHLLRDHGLTG
TKLAETWQEALGVGETQVALIVLPLDHGFTAPNVAVLTEQDMLGDRLIRRAKRRKSADAF
LAELATLSPGDLVVHTDHGIGRYVGLTQVPVAKAPHDCVQLEYAGGDKLYVPVENLEVLS
RYGAGEEGASLDRLGGEGWQRRKSKMKERIREIAGELMATAAARALRPGEIAEPDSSGYP
GFVDRFPYQETDDQDRAIEETLADLSAGKPMDRLIVGDVGFGKTEVALRAAFVAAMAGMQ
VAIVCPTTLLARQHHLNFTTRFEGFPIEIGRLSRLVPAAEAKRVKEGLASGQLDVVIGTH
ALLAKGIDFKRLGLVVVDEEQRFGVTHKERLKALKADVHVLTLTATPIPRTLQMAMSGLR
ELSVIQTPPVDRLAVRTYVMPWDPVVLREALLREHYRGGQSFLVTPRIADLPDIEEFLRK
EVPEIRYVIAHGQMAPAQVEERMSAFVEKKFEVLISTSIIESGIDIPSANTLIVNRADRF
GLAQLYQLRGRVGRSKTRAYAYMVTPPERMMTDAAEKRLKVLSDLDSLGAGFQLASHDLD
IRGAGNLLGDEQSGHIKEVGYELYQSMLEEAIMDARAGGMASRPRDFSPQITVDTPILIP
EEYVPDLDLRMGLYRRLNDLDSKPDLDAFAAEMIDRFGALPEATDNLVKVIEIKMNAKVA
CVSKMDVGPKGALVSFHDDKPPNIDGLLAYVEKLGGIAKLRPDSKLALTRNWADPAARLH
GALQLSKGLAKAAG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaccttcaaaccatcctagccgccaccgcccccctaaccctgtcgggcgtcccc
accggcttcctccccagcgtcctcgccgatctcgcgcgcgccgcgaagacgcgtgccgtc
ttcatcgcgcccgacgaagccgcaatgcgcgcgatcgcctccaccgcgcattatttcgcg
ccagagctcgagatcgtcgaattccccgcctgggattgcctgccctacgatcgtgcctcg
cccaccctgcgcgtcatggcggagcggatcggcgcgctccaccggctgcagcacaagctg
aaggcgccgcagctcgtcctcaccaccgtcaatgccgcggcgcagcgcacgctcaccccg
ttccgcatccgccagctcgtcgcgacgctccaacccggcgaacgcatcgcccgcgacaag
ctcgccacgctcctctcggccaacggctatgtccgcaccgataccgtccacgattcgggc
gaattcgccgtccgcggcggcctcgtcgacctcttcccctcgggcgagacccacgcgctg
cggctcgatttcttcggtgacgagatcgagagcgtccgcaccttcgatcccgccgatcag
cgcaccaccggcaagctccccggcttcaccctcctccccgcctccgaggcgctgctcgac
gacgacagcatcaagcgcttccgcagccgctatcgcgagaccttcggcgccaccgcgacc
ggcgatccgctctaccaggcgatcagcgacggccgccgcctcgccggcatggaacattgg
ctgccgctgttcgaggagaagctagcaacgctcttcgaccatctcggcgacgacgcgctg
atcgtccgcgatcacggcgtgaaggccgccggcgattcccgcttcgaatcggtcgccgat
tattacgagaaccgcaaacgcgccgaggccgcgcaacccggcagctaccgcgcgctcccc
gcgaagaccttgtacctcgcgccgaaggagtgggacgaagcgctggtcaccaccgccgcg
cacgtcaccaccccgttccacgagcccgaatccaagaccgtgatcgacttcggcgtcgac
ggcccgcgcgatttcggccccgagcggatggcgggcaacaccggcggcaacgtctacgaa
gccgtcgtcgatcacctcgccaaactccgccgcgacggccgcacccccgtcctcgccagc
tattcgatcggcgcgcgcgatcgcctcggccatctgctccgggaccacggcctcaccggc
acgaagctggccgagacatggcaggaggcgctcggcgtcggcgagacgcaggtcgcgctg
atcgtcctgccgctcgaccacggcttcaccgcccccaacgtcgccgttctcaccgagcag
gacatgctcggtgaccgcctcatccgccgcgccaagcgccgcaagtccgccgacgccttc
ctcgccgagctcgccacgctctcccccggcgatctcgtcgtccacaccgatcacggcatc
ggccgctacgtcgggctgacgcaggtgccggtcgccaaggcgccgcacgattgcgtccag
ctcgaatacgccggcggcgacaagctctacgtgccggtcgagaacctcgaagtcctctcg
cgctatggcgccggcgaagagggcgccagcctcgatcggctcggcggcgagggctggcag
cgccgcaagtcgaagatgaaggagcggatccgcgagatcgccggcgagctgatggccacc
gccgccgcccgcgcgctgcgccccggcgagatcgccgagcccgattccagcggctacccc
ggcttcgtcgatcgcttcccctatcaggaaaccgacgatcaggaccgcgcgatcgaggaa
acgctcgccgacctctccgccggcaagccgatggaccggctcatcgtcggcgacgtcggc
ttcggcaagaccgaggtcgcgttgcgcgccgccttcgtcgcggcgatggccggcatgcag
gtcgcgatcgtctgccccaccacgctcctcgcgcgccagcatcacctcaatttcaccacg
cgcttcgaaggcttcccgatcgagatcggccgcctctcgcgcctcgtccccgccgccgaa
gcgaagcgcgtcaaggaaggcctcgcctccggccagctcgacgtcgtgatcggcacgcac
gccctcctcgccaagggcatcgatttcaagcgcctcggcctcgtcgtcgtcgacgaggag
cagcgcttcggcgtcacccacaaggaacggctgaaggcgctcaaggccgacgtccacgtc
ctcacgctcaccgccacgccgatcccgcgcacgctgcagatggcgatgagcggcctgcgc
gaactctccgtcatccagactccgccggtcgatcgcctcgcggtgcgcacttatgtgatg
ccctgggatcccgtcgtcctgcgcgaggcgctgctgcgcgagcattaccgcggcgggcaa
agcttcctcgtcaccccgcgcatcgccgatctgcccgacatcgaggaattcctgcgcaag
gaagtccccgagatccgctacgtcatcgcgcacggccagatggcgccggcgcaggtcgag
gagcgcatgtcggccttcgtggaaaagaagtttgaagtgctcatctccacctcgatcatc
gagagcggcatcgacatcccctcggccaacacgctgatcgtcaaccgcgccgatcgcttc
ggcctggcgcagctttaccagctgcgcggtcgcgtcggccgctcgaagacgcgcgcttat
gcctatatggtcacgccccccgaacggatgatgaccgacgccgccgaaaagcgcctcaag
gtgctcagcgatctcgacagcctgggcgccggcttccagctcgccagccacgatctcgac
atccgcggcgcgggcaatctgctgggcgacgaacagtccggccacatcaaggaagtcggc
tacgagctataccagtcgatgctcgaggaagcgatcatggacgcgcgcgccggcggcatg
gccagccgcccgcgcgatttctcgccgcagatcaccgtcgacacgccgatcctgatcccc
gaggaatacgtccccgatctcgaccttcgcatgggcctttaccgccgcctcaacgatctc
gacagcaagcccgacctcgacgccttcgccgccgaaatgatcgaccgcttcggcgccctg
cccgaggcgaccgacaatctggtgaaggtcatcgagatcaagatgaacgccaaggtcgcc
tgcgtttcgaagatggacgtggggccaaagggcgcgctggtgagcttccacgacgacaag
ccgcccaacatcgacggcctgctggcgtacgtcgaaaagctcggcggcatcgcgaagctg
cgcccggattcgaagctggcgctgacgcgcaactgggccgacccagccgcccggctgcac
ggcgcgctgcaactgtcgaaggggctggcgaaagcggcgggctaa
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