Streptococcus ratti: FY406_00715
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Entry
FY406_00715 CDS
T06620
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
srat
Streptococcus ratti
Pathway
srat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FY406_00715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srat03019
]
FY406_00715
03009 Ribosome biogenesis [BR:
srat03009
]
FY406_00715
Enzymes [BR:
srat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FY406_00715
Messenger RNA biogenesis [BR:
srat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FY406_00715
Ribosome biogenesis [BR:
srat03009
]
Prokaryotic type
rRNA helicases
FY406_00715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QEY06294
LinkDB
All DBs
Position
complement(156515..158068)
Genome browser
AA seq
517 aa
AA seq
DB search
MKFTELNLTEDILSAVEKAGFTEPSPIQELTIPLALAGKDVIGQAQTGTGKTAAFGLPTL
NKINIASNLVQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLF
SATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLIDVEQPD
LAIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVSPNEMGYLQIIENLTKK
RMKGMKPATAEEAFQASKKVALKKIEGDFADEKIRSNFEKFTNDAEKLVAEFSPEELAQY
ILTLTVQDPEMLPKVEIAREKPLPFKFAGKGKGGNRRRDDRRGGRDNRRNQRDGGRREFK
RTSNKNRKDFENKGNKRPHRTSNEKKNGFTIRNKGDR
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaattaaacctaacagaagacattctttctgctgttgaaaaagctggc
tttactgagccatcacctatccaagaattgaccattcctctcgctcttgcaggaaaagat
gtcattggtcaggcacaaacaggtacaggaaaaactgcagcctttggcctaccaacttta
aacaaaattaatattgccagcaatctagtgcaggcgcttgtgattgctcctacgcgtgaa
ttggccgttcaatctcaagaagaactcttccgttttggccgtgaaaagggtgttaaggtt
cgttcggtttacggtggatccagtattgaaaaacaaataaaggctctgaagtcaggtgct
catattgttgttggaacgccgggccgcctgcttgatttgatcaaacgcaaagcgcttaag
ctgaatcatgttgaaacccttattttggatgaagctgatgaaatgcttaacatgggcttt
ttagaggatattgaagcaattatttcacgtgtgcccgaaagccgtcaaacgctgctcttt
tcagcaactatgccggatgccatcaaacgtattggtgtcaagtttatgaaagagccagaa
catgttaagatcgctgccaaggaattgacaacagacttggttgatcagtactatatccgc
gtcaaggaaaatgaaaaatttgacaccatgacccgccttatagatgtggagcagccagat
cttgctattgtttttggtcgcaccaagcgccgggtagatgagctgacccgcggcttaaaa
ctgcgcggctaccgtgctgaaggaatccatggggatttggatcagggcaaacgcctgcgt
gtgctccgtgatttcaaaaatgacaaccttgatattttggttgcaacagacgtggctgca
cgcggtctcgatatttcaggtgtgacccatgtttacaattatgatattccgcaggatcca
gaaagctatgttcaccggatcggccgtacgggccgtgccggcaagcatggtcagtccatc
acttttgtctctccaaatgaaatgggctacctgcaaatcattgaaaatctgaccaagaaa
cgcatgaaaggcatgaaaccagcaactgctgaggaagcctttcaagcaagtaaaaaggtt
gcgcttaagaaaattgaaggtgactttgcagacgaaaaaattcgttccaattttgaaaaa
tttaccaatgatgctgaaaaattagtcgctgaattttcaccggaagaactggcacagtat
atactgaccttgacagttcaggatccggaaatgttgcctaaggtcgaaattgcccgtgaa
aaaccgctgccctttaaatttgcaggtaaaggaaaaggtggcaatcgtcgtcgtgatgac
cgtcgaggaggacgagacaatcgccgcaaccagcgtgatggtggtcgtcgtgaatttaaa
cggacttccaataaaaatcggaaagattttgaaaataaaggaaataaacgccctcaccgt
acatcaaatgaaaagaaaaacggcttcaccattcgcaataaaggtgacagataa
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