Streptomyces rapamycinicus: M271_15220
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Entry
M271_15220 CDS
T02907
Name
(GenBank) ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
src
Streptomyces rapamycinicus
Pathway
src03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
src00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M271_15220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
src03019
]
M271_15220
Messenger RNA biogenesis [BR:
src03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M271_15220
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
FAD_binding_4
Motif
Other DBs
NCBI-ProteinID:
AGP54623
UniProt:
A0A0A0NEV3
LinkDB
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Position
complement(3930411..3932096)
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AA seq
561 aa
AA seq
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MSHPHPELGPPPKLPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGV
DLILPDFTSIRGRLDDIDGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVEEGHRERIGPFECEFVAVNHSIPDALAVAIRTPAGMAVHTGDFKMDQLP
LDGRLTDLPAFAKLGEEGIDLLLVDSTNAEVPGFVPPERDISAVLRQVFGNAQKRIIVAS
FASHVHRIQQILDAAHEYGRKVAFVGRSMVRNMGIARDLGYLRVPAGLVVDVKTLDDLRD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVEGDTVILASSLIPGNENAVYRVINGLTRW
GATVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGALTGVPKN
RCVIAEDGVVVDLVDGIAKIVGKVQAGYVYVDGLSVGDVTETSLKDRRILGDEGIISIFV
VVDSSTGKIVGGPHIQARGSGIEDSAFSAVIPKIEDALIKSASDGVVDPHQLQQLARRAV
GKWVSDSYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgagctcggccctccgccgaagctccccgagggcggtctgcgc
gtcaccccgctcggtggcctcggtgagatcggccggaacatgacggtcttcgagtacggc
ggccggctgctgatcgtcgactgcggggtgctcttccccgaggaggagcagcccggagtc
gacctgatcctgccggacttcacatccatccggggccgtctagacgacatcgacggcatc
gtcctcacccacggccatgaggaccacatcggcggcgtccccttcctgctccgcgagaag
cccgacatcccgctgatcggctccaagctgacgctcgccctgatcgaggcgaagcttcag
gagcaccggatccgtccgtacaccctcgaggtcgaggaggggcaccgcgagcggatcggc
cccttcgagtgcgagttcgtcgcggtcaaccactccatcccggacgccctggcggtcgcc
atccgcaccccggccggcatggccgtgcacaccggcgacttcaagatggaccagctgccg
ctcgacggccggctcacggatctgcccgcgttcgccaagcttggcgaggagggtatcgat
ctgctcctggtggactccaccaacgccgaggtccccgggttcgtaccgcccgagcgcgat
atttccgctgtgctgcgccaggtcttcggcaacgcgcagaagcgcatcatcgtcgccagc
ttcgccagccatgtgcaccgcatccagcagatcctggacgcggcgcatgagtacgggcgc
aaggtcgccttcgtcggccgctcgatggtccgcaacatgggcatcgcccgtgacctcggc
tatctgagggtgcctgccggtctcgtggtggacgtgaagaccctcgacgacctacgggac
gacgaggtggtgctcgtctgcacgggctcccagggcgagccgatggccgcgctgtcccgg
atggccaaccgcgatcaccagatccggatcgtcgagggcgacacggtgatcctggcctcg
tcgctgatccccggcaatgagaacgcggtctaccgggtgatcaacgggctgacacgatgg
ggcgccacggtcgtccacaagggcaacgccaaggtccatgtctccggccatgcctcggcc
ggtgagttgctgtacttctacaacatctgcaggcccaagaacctgatgccggtgcacggc
gaatggcgccatctgcgcgccaacgccgagttgggcgcgttgaccggggttccgaagaac
cgttgcgtcatcgccgaggacggtgtcgtggtggacctggtcgacggcatcgccaagatc
gtcggcaaggtgcaggcgggatacgtgtacgtggacggcctctcggtcggcgatgtcacg
gagacctcgctcaaggaccgccgcatcctcggggacgagggcatcatctcgatcttcgtg
gtcgtcgacagctcgaccggcaagatcgtgggcggtccgcatatccaggcgaggggctcc
ggcatcgaggactccgccttctccgcggtcatcccgaagatcgaggatgccctgatcaag
tcggcctccgatggggtcgtggacccgcaccagctccagcagctggcgcgccgcgcggtc
ggcaagtgggtctccgacagctaccgccgccgtccgatgatccttcctgtggtggtcgag
gtctga
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