Streptomyces rapamycinicus: M271_18000
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Entry
M271_18000 CDS
T02907
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
src
Streptomyces rapamycinicus
Pathway
src03420
Nucleotide excision repair
src03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
src00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M271_18000
03430 Mismatch repair
M271_18000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
src03400
]
M271_18000
Enzymes [BR:
src01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M271_18000
DNA repair and recombination proteins [BR:
src03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M271_18000
MMR (mismatch excision repair)
Other MMR factors
M271_18000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AGP55158
LinkDB
All DBs
Position
complement(4574709..4578380)
Genome browser
AA seq
1223 aa
AA seq
DB search
MSARITDPEELKELLGIPFTPEQVACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQ
VAPDRVLGLTFTNKAAGELAERVRKALVTAGIVDPDPDPGATEEAPGDPVISTYHAFAGQ
LLKDHGLRVGLEPSARLLADATRFQLAARVLRSAPGPYPALTRPFADLVTDLLALDAELA
EHLVPTGRLRAYDTELLRTLEGTRLTNEALRKVPEAARARQELLGLVEAYREEKRRRDLL
DFGDQIAHSATLALDHPEVGRILREQFAVVLLDEYQDTSVAQRLLLSGLFGGGTGHPVTA
VGDPCQAIYGWRGASVANLDDFPEHFPHADGRPAERFALSENRRSGGRLLDLANGLAAPL
RAMHEGVEALRPAPGAERDGAVRCALLPTHAEELVWLADSIAHLVRTGTPPAEIAVLCRT
AGDFAQIQGALVERDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANAALVRLLTGPRW
RIGPRDLALLGRRARAVVSYGGQDGAEDDPDRRLAEAVEGTDPAEVISLADALDTFLEAG
GGPDDGLPFSADARVRFARLAAELRELRRSLADPLMDVLHRVLATTGLEVELSASPHALA
ARRRETLGNFLDVAAAFAGREGGAAVDGEATLQGFLGFLRTAAQYEKGLDNALPGGENTV
KVLTAHKAKGLEWDVVAVPGLVAKQFPSEQSRESWTANAKVLPHELRGDARTLPDVTAWD
SKGIAAFKDAMKGHQRTEELRLGYVTFTRPRSLLLGSGHWWGPTQKRPRGPSGFLDALRE
HCEAGYGEIEAWAEPPEEGAENPALRESAADRAWPLPLDPAALRHRRRAADVVLAHLARI
ETEGEEPTARDEEHSPADADLFPEPPEELEPPEDPEWPEPPEDPYGSYEDEPYDDAPHPG
PYGAPEPGAPEPDVPEITSEAAEDEPTPEEARLIGSWDRDLDALAGELRRARETVHEVPL
PGTLTASQLLRLAADPDGFARELARPMPRPPRPAARRGTRFHAWVESRFEALPLPFLGPD
ELPGGEDDEAEIADERDLTALKEAFARTPYARRTPYRVEVPVQLTLAGRTIRGRIDAVYR
ESGTGSDDGPRYEIVDWKTGRSQDADPLQLAIYRVAWAEQHGLPLSAVTAAFVYVRSGEV
VRPAGLPGRAGLERVLLGEPGDAEVGGNVDVGGNVEAGGKADAGGDGDGDGGDRDADIGG
DGDADATGNDRIDAGTVTESEHT
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagcccgcatcaccgatcccgaggagctcaaggaactcctcgggatcccgttcacc
ccggagcaggtggcgtgcatcaccgcaccgcccgccccgcaggtgatcgtcgccggggcg
ggttccggaaagaccacggtgatggccgcccgcgtcgtctggctggtcggcaccggccag
gtcgcgcccgaccgggtgctcggcctcaccttcaccaacaaggccgccggagagctggcg
gagcgcgtccgtaaggccctcgtcacggcgggcatcgtggacccggacccggatccgggc
gccaccgaggaggccccgggcgaccccgtcatctccacgtaccatgccttcgccgggcag
ttgctcaaggaccacgggttgcgcgtcggcctcgaaccgagcgcccggctgctcgccgac
gccacccgcttccagctggccgcgcgcgtcctgcgctccgcccccggcccgtatccggcg
ctcacccgccccttcgccgacctggtcaccgatctgctcgcgctcgacgccgagctcgcc
gagcacctcgtccccaccgggcggctgcgcgcgtacgacaccgagttgctgcggacgctg
gagggcacgcggctcaccaacgaggcgctgcgcaaggtgcccgaggccgctcgcgcccgc
caggagctgctgggcctggtcgaggcgtaccgcgaggagaagcgccgccgcgatctgctc
gacttcggcgaccagatcgcccattcggccactctggccctggaccacccggaggtcggc
cggatcctgcgcgagcagttcgcggtcgtgctgctcgacgagtaccaggacacctccgtc
gcccagcggctgctgctgtccggcctcttcggcggcggcaccggacatcccgtcaccgcc
gtcggcgacccctgtcaggccatctacggctggcgcggcgcctccgtggccaacctggac
gacttccccgagcacttcccgcacgccgatggccgcccggctgagcgcttcgcgctcagc
gagaaccggcgcagcggcggccgcctcctggacctcgccaacgggctggccgccccgctg
cgcgcgatgcacgagggcgtcgaggcgctgcgccccgcgcccggcgccgagcgggacgga
gcggtgcgctgcgcgctgctgcccactcacgccgaggagctggtctggctcgcggactcc
atcgcccatctggtgcgcaccggcaccccgcccgctgagatcgcggtgctgtgccgtacg
gcgggtgacttcgcgcagatccagggcgcgttggtggagcgggacgttccggtggaggtg
gtgggcctgtcggggctgctgcatctgccggaggtcgccgatctggtggcagtctgcgag
gtcctccaggacccgggggccaacgccgcgctggtccgtctgctcaccgggccgcgctgg
cggatcggcccccgcgacctcgcgctgctcggccgccgtgcccgcgcggtggtctcttac
ggtggccaggacggggcggaggacgatccggaccgacggctcgccgaggccgtcgagggc
accgaccccgccgaggtgatctccctcgccgacgccctcgacaccttcctggaggcgggc
ggcggcccggacgacgggctgcccttctcggccgacgcacgggtccggttcgcccggctg
gccgccgaactccgcgagctgcgccgctcgctggccgatccgctgatggacgtcctccac
cgggtcctggccaccacgggcctcgaggtcgagctgtccgcctcaccgcacgccctggcc
gcgcgccgccgcgagacgctcggcaacttcctggacgtcgcggccgccttcgcgggccgg
gaaggcggcgcggccgtggacggcgaggccacccttcagggcttcctcggcttcctgcgc
accgccgcgcagtacgagaaggggctcgacaacgccctgcccggcggcgagaacacggtc
aaggtgctcaccgcccacaaggccaaggggctggagtgggacgtggtggcggtgccgggg
ctggtcgccaagcagttcccgagcgaacagtcccgcgagtcctggacggcgaacgccaag
gtgttgccgcacgaactgcgcggggacgcccgtaccctcccggacgtcaccgcctgggac
agcaaggggatcgccgccttcaaggacgccatgaaggggcatcagcggaccgaggagctg
cggctgggctatgtgaccttcacccggccgcgctcgctgctgctcggctccgggcactgg
tggggccccacccagaagcgtccgcgcggcccgtcgggcttcctggacgcgctgcgcgag
cactgcgaggccgggtacggcgagatcgaggcatgggccgaaccgccggaggagggcgcg
gagaacccggccctgcgggagtcggcggccgaccgggcctggccgcttccgctggacccg
gccgcgctgcgccaccgccgccgcgccgccgatgtggtgctcgcccatctggcgcgcatc
gagacggagggggaggagccgaccgcgcgggacgaggagcactccccggcggacgctgac
ctctttccggagcccccggaggagctcgagcccccggaggacccggagtggcccgaacct
ccggaggatccttacggttcgtacgaggacgagccctacgacgacgcgccgcaccccggc
ccttacggcgcgccggaacctggcgcaccggagcccgatgtgcccgaaatcacgtcagaa
gcggccgaggacgagccgacgcccgaggaggcccggctgatcggttcctgggaccgcgat
ctggacgcgctcgccggagagctgcgccgggcccgggagaccgtgcacgaggtgcccctg
ccgggcacgctcaccgcgtcccagctgctgcgcctcgccgccgacccggacggcttcgca
cgggagctggcccgccccatgccccggccgccgcgccccgccgcgcggcgcggcacccgc
ttccacgcctgggtcgagtcgcgcttcgaggcgctgccgctgcccttcctcggcccggac
gagctgccgggcggcgaggacgacgaggcggagatcgccgacgagcgtgatctgaccgcg
ctcaaggaggcgttcgcccgcacgccgtacgcccgtcgcaccccttaccgcgtggaggtg
ccggtccagctgaccctggcgggccgcaccatccgcggccggatcgacgcggtgtaccgc
gagtccggtacgggctctgacgacggcccgcgctacgagatcgtcgactggaagaccggc
cgctcccaggacgccgacccgctccagctggccatctaccgcgtcgcctgggccgaacag
cacgggctgcccctgtcggcggtcacggcggccttcgtgtacgtacgcagcggtgaggtg
gtccgccccgccgggctgcccggccgggccgggctcgagcgcgtcctgctcggggagcca
ggggacgcggaggtcggcgggaacgtggacgtcggcgggaacgtggaagccggtgggaag
gcggacgccggcggggacggagacggggacggcggggaccgagacgccgacatcggtggg
gacggagacgcggacgcgaccggaaatgaccgtatcgatgccggaaccgtcacagagagc
gagcacacctga
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