Streptomyces rapamycinicus: M271_23620
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Entry
M271_23620 CDS
T02907
Name
(GenBank) RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
src
Streptomyces rapamycinicus
Brite
KEGG Orthology (KO) [BR:
src00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
src03019
]
M271_23620
Enzymes [BR:
src01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
M271_23620
Messenger RNA biogenesis [BR:
src03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M271_23620
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
APHB_HrpA
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
T2SSE
ResIII
NACHT
nSTAND_NTPase5
SLFN-g3_helicase
NTPase_1
AAA_16
PhoH
SRP54
AAA_25
AAA_30
Zeta_toxin
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AGP56229
UniProt:
A0A0A0NGX1
LinkDB
All DBs
Position
5880753..5884679
Genome browser
AA seq
1308 aa
AA seq
DB search
MSTTPAPALPALLERLPELMLRDQQRLGRRLDGARRIRKPEARAAVLGEIADEMTRAELR
VADRRAAVPAITYPEELPVSQKKDAILEAVRDHQVVIVAGETGSGKTTQIPKICLELGRG
VKGLIGHTQPRRIAARTVAERIAEEMRSPLGESVGWKVRFTDQVGQDTHVKLMTDGILLA
EIQTDRELRQYDTIIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVVITSATIDPERFSRH
FGDAPIVEVSGRTYPVEVRYRPLLEEGGEDSDRDQITAICDAVDELQAEGPGDILVFLSG
EREIRDTADALNKKKLPVTEVLPLYARLSHAEQHRVFQRHTGRRIVLATNVAETSLTVPG
IRYVIDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICVRLYSEDDFVT
RPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDRRNIKDGVQLLEELHALDGKQ
KDPRKRLTQVGRKLAQLPVDPRLARMVLEADRNGCVREVMVIAAALSIQDPRERPSDKQQ
QADQQHARFKDEASDFLAFLNLWKYVRERQKELSSSAFRRMCRNEYLNYLRIREWQDIYS
QLRTVAKTMDIHMSEQDAAPDRVHTSLLAGLLSHVGLKDTDKNEYVGARSAKFAVFPGSA
LFKKPPRWVMSAELVETSRLWARVNARIEPEWIEPLAQHLVKRTYSEPHWEQKQAAVMAY
ERVTLYGVPIVAQRKVNYGRIDPETSRDLFIRNALVEGDWRTHHQFFHDNRKLLGEVEEL
EHRARRRDILVDDETLFDFYDQRIPEHVVSGAHFDSWWKHKRREEPELLNFEKSMLINER
AQGVTKDAYPDSWRQGKLKFKVTYQFEPGADADGVTVHIPLQVLNQVTPDGFDWQIPGLR
EDLVTELIRSLPKPVRRHYVPAPNYAKRFLESAVPLQEPLTAALGRELQRMVGVRIEPED
WDLTKVPDHLKITFRVVDERRRKLAEDRDLEALRQRLRPKTRAAISKAFESSKEAVGIEQ
RGGLTRWTVGTLPRTFETRRGGQPVKAYPALVDEGSSVAVRLFDTEVEQREAMWRGTRRL
ILLQLPSNPAKFVQGKLSNQAKLALSSSPHGSVQALFDDCVAAAADRLIAARGGPVWDEE
SFRKLFDAVRSDIMDATLDTVRKVQEVLAAWQSCERRLKATRSPVLLTSLTDIREQLSEL
ITPGFVTAHGVRRLPDLMRYLVAVDRRLQQLPGNAERDRSRMAKVREMRDEYAWLLEQFP
PGRPVPQEALEVRWMIEELRVSYFAHALGTAYPVSDKRIVKAIDAAAP
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccacgcctgcccccgccctgcccgccctgctggagcggctgcccgagctgatg
ctgcgcgaccagcagcggctgggacgccggctcgacggtgcgcgccggatccgtaaaccc
gaggcccgtgcggccgtgctcggcgagatcgccgacgagatgacgcgtgccgagctgcgg
gtcgcggaccgccgcgccgcggtgccggccatcacctatccggaagagctgccggtcagc
cagaagaaggacgcgatcctcgaggccgtccgggatcaccaggtggtgatcgtcgcgggt
gagaccggctccgggaagaccacccagattccgaagatctgcctggagctggggcgcggc
gtcaagggcctcatcggccatacgcagccacgccggatcgcggcccgcacggtggccgag
cgcatcgccgaggagatgcggtcaccgctcggcgagtccgtcggctggaaggtccggttc
accgaccaggtgggccaggacacccacgtcaagctgatgaccgacggcattctgctcgcc
gagatccagaccgaccgcgagctgcgccagtacgacacgatcatcatcgacgaggcccat
gagcgcagcctcaacatcgacttcctgctcggctatctggcccagctgctgccccgccgc
cccgacctcaaggtcgtgatcacctccgccaccatcgacccggagcgcttctcccgccat
ttcggcgacgcgccgatcgtcgaggtcagcgggcgtacgtatccggtcgaggtgcgctac
cgcccgctgctcgaggagggcggcgaggacagcgaccgcgaccagatcaccgcgatctgc
gacgcggtcgacgagctccaggccgagggcccgggcgacatcctggtcttcctctccggc
gagcgggagatccgcgacaccgccgacgcgctgaacaagaagaagctcccggtcaccgag
gtgctcccgctgtacgcgcggctgtcgcacgccgagcagcaccgggtcttccagagacac
accggccgccggatcgtgctggcgacgaacgtggccgagacctcgctgaccgtccccggc
atccgctatgtgatcgacccgggcaccgcccggatctcccgctacagccatcgcaccaag
gtccagcggctgcccatcgagccggtctcccaggccagcgccaatcagcgcaagggccgc
tgcggccggaccagcgacggcatctgcgtccggctgtactccgaggacgacttcgtcacc
cgcccggagttcaccgacgccgagatcctgcggaccaacctcgcctccgtcatcctccag
atgaccgccgccggcctcggcgacatcgagaagttccccttcatcgacccgccggaccgc
cgcaacatcaaggacggcgtccagctcctggaggagctgcacgccctggacggcaagcag
aaggacccgcgcaagcggctcacccaggtcggccggaagctggcccagctgccggtggac
ccgcggctggcccggatggtgctggaggcggatcgcaacggctgtgtccgcgaggtcatg
gtgatcgcggcggcgctgtccatccaggacccgcgtgagcgcccctcggacaagcagcag
caggcggatcagcagcacgcccgcttcaaggacgaggccagcgacttcctggccttcctc
aatctgtggaagtacgtccgggagcggcagaaggagctgtcctcctccgccttccgccgg
atgtgccgcaatgagtacctcaactacctgcgcatacgcgaatggcaggacatctacagc
cagttgcgcacggtcgccaagaccatggacatccatatgtccgagcaggacgcggcgccc
gaccgcgtccacacgtcgctgctggcgggtctgctgtcccatgtgggcctgaaggacacc
gacaagaacgagtacgtgggcgcgcgcagcgccaagttcgcggtcttccccggctcggcg
ctgttcaagaagccgccgcgctgggtgatgtcggcggagctggtggagacgtcccggctg
tgggcgcgggtcaatgcccggatcgagccggagtggatcgagccgctcgcccagcacctg
gtcaagcgcacctacagcgagccgcactgggagcagaagcaggccgcggtgatggcgtat
gagcgggtgacgctctacggggtgccgatcgtcgcccagcggaaggtcaactacggccgg
atcgaccccgagaccagccgcgacctgttcatccgcaacgccctggtggagggcgactgg
cgcacccaccaccagttcttccacgacaaccgcaagctgctgggcgaggtcgaggagctg
gagcaccgcgcccggcgccgcgacatcctcgtggacgacgagacgctcttcgacttctac
gaccagcggatccccgagcatgtggtgtccggcgcgcacttcgactcctggtggaagcac
aagcggcgcgaggagccggagcttctcaacttcgagaagtcgatgctcatcaacgagcgg
gcgcagggggtcaccaaggacgcctatccggactcctggcgccaggggaagctcaagttc
aaggtgacgtaccagttcgagccgggggcggacgcggacggtgtgaccgtccacatcccg
ctccaggtgctcaaccaggtcaccccggacggcttcgactggcagatcccggggctgcgc
gaggatctggtcaccgagctgatccgctcgctgcccaaaccggtccgccggcactacgtc
ccggcgcccaactacgccaagcgcttcctggaaagcgctgtcccgctccaggagccgctg
acggcggcgctggggcgggagctccagcggatggtgggcgtacggatcgagccggaggac
tgggacctgacgaaggtccccgaccacctgaagatcaccttccgggtggtggacgagcgg
cgccgcaaactggccgaggacagggacctggaggcgctgcggcagcggctgcggcccaag
acgcgggccgcgatctccaaggcgttcgagtcctccaaggaggccgtggggatcgagcag
cgcggcgggctgacccggtggacggtcggcacgctgccgcgcaccttcgagacgcgccgg
ggcggccagccggtcaaggcgtatccggcgctcgtcgacgagggctcctcggtggccgtg
cggctcttcgacaccgaggtcgagcagcgggaggcgatgtggcgggggacgcgccggctg
atcctgctccagctgccgtccaacccggcgaagttcgtccagggcaagctctccaaccag
gccaagctggcgctctccagcagcccgcacggcagtgtgcaggcgctgttcgacgactgc
gtggccgcggcggccgaccggctgatcgcggcccgtggcggcccggtctgggacgaggaa
tcgttccgcaagctcttcgacgccgtccgcagcgacatcatggacgccacgctggacacc
gtgcgcaaggtccaggaggtgctggcggcctggcagtcgtgcgagcggcggctgaaggcc
acccgcagcccggtgctgctgacgtccctcacggacatcagggagcagctctccgagctc
atcacgccgggtttcgtgaccgctcacggcgtacggcggctcccggacctcatgcgctat
ctggtggccgtggaccggcggctccagcagcttccgggcaacgccgagcgggaccgctcc
cggatggcgaaggtgcgggagatgcgggacgagtacgcctggctgctggagcagttcccg
cccgggcgcccggtgccccaggaggcgctggaggtccgctggatgatcgaggaactgcgg
gtcagctacttcgcgcacgccctcggcacggcctatccggtgtccgacaagcgcatcgtc
aaggccatcgacgcggcggctccgtaa
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