KEGG   Spirosoma radiotolerans: SD10_06410
Entry
SD10_06410        CDS       T03819                                 
Name
(GenBank) RNA polymerase sigma54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
srd  Spirosoma radiotolerans
Pathway
srd02020  Two-component system
srd02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:srd00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    SD10_06410
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    SD10_06410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:srd03021]
    SD10_06410
Transcription machinery [BR:srd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     SD10_06410
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID LacI HTH_12 PRKG1_interact PI_PP_I
Other DBs
NCBI-ProteinID: AKD54595
UniProt: A0A0E3ZUK0
LinkDB
Position
complement(1642230..1643675)
AA seq 481 aa
MQKLSLSQSLQQKLSPQQIQFIKLLQIPTVELDTRIEEELEINPALEEGMDEEYDQKEDD
PYDETDDYKDRDNDLDIDSYIQDEDYAGYKMQGDGNYGEEERDMPLATSSSLTDSLLQQF
GYLQLTEEQRIVGLQLIGSIEADGYIRRSVQAIVNDLAFSQNVFTDADEVEEVLQKIQSF
DPAGIGARSLPECLLLQLRRKDQSDPYNVLAIRIIDEFFDEFSKKHYDKIQRRLNISDDS
LKRVIDIIIRLNPKPGSIEGESGTIQYLIPDFLLTNNNGKLELTLNSKNAPELRISRSFA
DMLDTYDKSKKQNKNLKETVSFVKQKLDAAKWFIDAIKQRQQTLLKTMNAIVRYQYDFFL
TGDESRLRPMILKDIATLIDMDVSTVSRVANSKAVQTEFGIYPLKYFFSEGISTDTGEDV
SSREVKNILKDLIDAEPKLHPLSDDKLEKILNDRGYNIARRTVAKYREQLNIPVARLRKQ
L
NT seq 1446 nt   +upstreamnt  +downstreamnt
atgcagaaattaagtctttcacaatcccttcagcagaagctgtctcctcagcagattcag
ttcattaaactgttacaaataccgacagttgaactggatacgcgcattgaggaagagctg
gagataaatccggctctggaagaaggtatggacgaggagtatgaccaaaaagaggatgac
ccctacgatgaaaccgacgactacaaagaccgggataacgacctcgacattgatagttac
attcaggatgaagattatgccgggtataaaatgcagggcgatggtaattatggggaggaa
gaacgcgatatgcccctggcgaccagctcaagcctgacagactcgcttctccaacagttc
ggctaccttcaactgactgaagaacagcgcattgttggcttacaactcattggcagcatt
gaagccgacggttatatccggcggtccgttcaggccattgtcaacgatttggccttctct
cagaacgtattcaccgatgcggatgaagtggaagaagtgctgcaaaaaattcagtcgttc
gatccggcaggcatcggcgcccggtcactccctgaatgcctgttgctacagcttcggcga
aaagaccagtcggacccgtacaacgtgctggccattcgaattattgacgagttcttcgac
gaattctccaaaaaacactacgataaaatccagcgtcggctcaacatcagtgacgattcg
ctcaaacgggtaatcgacattattatccggctaaaccccaagccaggctctatcgaaggc
gaatcggggactattcaatacctgatccctgacttcctgctgacgaataacaacggcaaa
ctggagttgaccctgaactccaaaaatgcccccgagttgcggatcagccgctcttttgcc
gacatgctcgacacctacgacaagagcaaaaaacaaaataaaaacctgaaagaaacggtt
tcgtttgtgaagcaaaagctggatgcggccaagtggtttatcgacgccatcaagcaacgc
cagcaaacgctgctcaagaccatgaacgccatcgtgcgttatcagtatgactttttcctg
accggtgatgagtcgcggttgcggcccatgatcctgaaagacattgccaccctgatcgac
atggacgtgtctacggtttcgcgggtggccaacagcaaggccgtacaaaccgaatttggc
atctacccgctcaaatatttcttctccgaaggcatttcgaccgatacgggcgaggatgtc
agcagccgggaagtcaagaacattttgaaagatttgatcgatgcggagcccaagcttcat
cccctctccgacgataaactggagaaaatactgaacgaccggggctacaatatcgcccgc
cggaccgttgccaaataccgcgaacaactcaacattccggtggcccggctccggaagcaa
ttgtaa

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