Spirosoma radiotolerans: SD10_06410
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Entry
SD10_06410 CDS
T03819
Name
(GenBank) RNA polymerase sigma54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
srd
Spirosoma radiotolerans
Pathway
srd02020
Two-component system
srd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
srd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SD10_06410
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SD10_06410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srd03021
]
SD10_06410
Transcription machinery [BR:
srd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SD10_06410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
HTH_12
PRKG1_interact
PI_PP_I
Motif
Other DBs
NCBI-ProteinID:
AKD54595
UniProt:
A0A0E3ZUK0
LinkDB
All DBs
Position
complement(1642230..1643675)
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AA seq
481 aa
AA seq
DB search
MQKLSLSQSLQQKLSPQQIQFIKLLQIPTVELDTRIEEELEINPALEEGMDEEYDQKEDD
PYDETDDYKDRDNDLDIDSYIQDEDYAGYKMQGDGNYGEEERDMPLATSSSLTDSLLQQF
GYLQLTEEQRIVGLQLIGSIEADGYIRRSVQAIVNDLAFSQNVFTDADEVEEVLQKIQSF
DPAGIGARSLPECLLLQLRRKDQSDPYNVLAIRIIDEFFDEFSKKHYDKIQRRLNISDDS
LKRVIDIIIRLNPKPGSIEGESGTIQYLIPDFLLTNNNGKLELTLNSKNAPELRISRSFA
DMLDTYDKSKKQNKNLKETVSFVKQKLDAAKWFIDAIKQRQQTLLKTMNAIVRYQYDFFL
TGDESRLRPMILKDIATLIDMDVSTVSRVANSKAVQTEFGIYPLKYFFSEGISTDTGEDV
SSREVKNILKDLIDAEPKLHPLSDDKLEKILNDRGYNIARRTVAKYREQLNIPVARLRKQ
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaattaagtctttcacaatcccttcagcagaagctgtctcctcagcagattcag
ttcattaaactgttacaaataccgacagttgaactggatacgcgcattgaggaagagctg
gagataaatccggctctggaagaaggtatggacgaggagtatgaccaaaaagaggatgac
ccctacgatgaaaccgacgactacaaagaccgggataacgacctcgacattgatagttac
attcaggatgaagattatgccgggtataaaatgcagggcgatggtaattatggggaggaa
gaacgcgatatgcccctggcgaccagctcaagcctgacagactcgcttctccaacagttc
ggctaccttcaactgactgaagaacagcgcattgttggcttacaactcattggcagcatt
gaagccgacggttatatccggcggtccgttcaggccattgtcaacgatttggccttctct
cagaacgtattcaccgatgcggatgaagtggaagaagtgctgcaaaaaattcagtcgttc
gatccggcaggcatcggcgcccggtcactccctgaatgcctgttgctacagcttcggcga
aaagaccagtcggacccgtacaacgtgctggccattcgaattattgacgagttcttcgac
gaattctccaaaaaacactacgataaaatccagcgtcggctcaacatcagtgacgattcg
ctcaaacgggtaatcgacattattatccggctaaaccccaagccaggctctatcgaaggc
gaatcggggactattcaatacctgatccctgacttcctgctgacgaataacaacggcaaa
ctggagttgaccctgaactccaaaaatgcccccgagttgcggatcagccgctcttttgcc
gacatgctcgacacctacgacaagagcaaaaaacaaaataaaaacctgaaagaaacggtt
tcgtttgtgaagcaaaagctggatgcggccaagtggtttatcgacgccatcaagcaacgc
cagcaaacgctgctcaagaccatgaacgccatcgtgcgttatcagtatgactttttcctg
accggtgatgagtcgcggttgcggcccatgatcctgaaagacattgccaccctgatcgac
atggacgtgtctacggtttcgcgggtggccaacagcaaggccgtacaaaccgaatttggc
atctacccgctcaaatatttcttctccgaaggcatttcgaccgatacgggcgaggatgtc
agcagccgggaagtcaagaacattttgaaagatttgatcgatgcggagcccaagcttcat
cccctctccgacgataaactggagaaaatactgaacgaccggggctacaatatcgcccgc
cggaccgttgccaaataccgcgaacaactcaacattccggtggcccggctccggaagcaa
ttgtaa
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