Spirosoma radiotolerans: SD10_09625
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Entry
SD10_09625 CDS
T03819
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
srd
Spirosoma radiotolerans
Pathway
srd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD10_09625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srd03019
]
SD10_09625
Enzymes [BR:
srd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SD10_09625
Messenger RNA biogenesis [BR:
srd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SD10_09625
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AKD55125
UniProt:
A0A0E3ZVH0
LinkDB
All DBs
Position
complement(2390609..2392054)
Genome browser
AA seq
481 aa
AA seq
DB search
MQFSDLSLIDPILKALAEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPIL
QLLSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRYLNLRSTVIFGGVSQHAQV
NTLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPE
RRQSLFFSATMPVDVAKLADTILHNPAKVEVTPVSSTADTIEQAMYFVGKDDKRKLLVHI
LDDKAIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVL
VATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETAYLRD
IHKLIGKRVPVIDNHPYVLNISESTVSPAPARQGQGGRNDNRRGGGRPGSHNERSAGSSN
NGGGQSRNQSPRPRSESQGSSSSAPRERESNRPARSNSRPQTQSRGTGNSRFSNSSSDKN
Y
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttccgatttatcattaattgatcccatcctgaaggcccttgctgaagaagga
tataccaaccctacacccattcaggaaaaagccataccgattttgttaagccgccgggat
ttactgggctgcgcgcaaaccggaacgggcaaaacagccgcctttgccatcccaattctg
caattgctaagcgaagaacgcagcaaaagcacgggtggcccacgacgcataaagacgctc
atcctgacgccaacccgcgaattagccattcagattgccgaaagttttacagcctatggt
cgttatctaaacctgcggagtacggttattttcgggggtgtttcgcaacacgcgcaggta
aataccttgaaagcgggcgtggatgtgcttatcgctacgcccggccgtttgctcgacctg
atgaatcagggatttatctcgctccgcgatgtgcagttttttgtcctggatgaagccgac
cggatgctcgacatgggttttattcatgacgtcaaaaaggtcattacaaaactgcccgag
cgccggcaatcgctgtttttctcagcaaccatgccggtcgacgtagctaaactggccgat
accattttacataatccggctaaagttgaagtgacacccgtttcttcgaccgccgacacg
attgaacaagccatgtattttgtcggcaaagatgacaagcgtaaactgctcgtccatatc
cttgacgacaaagcaattaaatcggcccttgttttcgcccgcaccaaacatggcgcggat
aaagttgtgaaagacctgttgaaagcgggcattggtgccgaagccattcacggcaacaag
tcgcagaatgcccgtcagcgtgcactttctaacttcaaaagtcgggaaacgcgcgtactg
gtggccacggatattgccgctcgtggtatcgacgtcgatgaattgtcgcacgtgatcaat
tacgagttaccaaacattcccgaaacctacgttcaccgcattggacggacaggccgggcg
ggtcatgatggcattgccctgtcgttctgcgatgccgaagaaaccgcatacctgcgcgac
attcataaactgattggcaaacgtgttccggttatcgacaatcacccgtacgtactgaat
atatccgagtcaactgtttcaccggctcctgcccgccagggccaaggtggtcgcaacgac
aatcgccggggcggtggccggccaggcagccataacgaacgctcagccggatcatcgaac
aacggtggcgggcagtcccgtaaccaaagtccgcgcccccgctctgaaagccagggtagc
agctcgtcggccccgcgtgaaagagaaagcaaccgcccagcccgcagcaacagtcgccca
cagacccaaagtcggggcactggcaacagccggttcagtaattcaagttccgataagaat
tattag
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integrated database retrieval system
