Spirosoma radiotolerans: SD10_11905
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Entry
SD10_11905 CDS
T03819
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
srd
Spirosoma radiotolerans
Pathway
srd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD10_11905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srd03019
]
SD10_11905
03016 Transfer RNA biogenesis [BR:
srd03016
]
SD10_11905
Enzymes [BR:
srd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SD10_11905
Messenger RNA biogenesis [BR:
srd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SD10_11905
Transfer RNA biogenesis [BR:
srd03016
]
Prokaryotic type
tRNA degradation factors
SD10_11905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH_2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AKD55501
UniProt:
A0A0E3V7K8
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All DBs
Position
2935906..2938032
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AA seq
708 aa
AA seq
DB search
MFEITTQSVALPDGREITIETGKLARQADGAVVVRLGDTMLLATVVSSKEAKEGVDFLPL
SVDYQEKFASAGRIPGSFQRREGRLGDHEILISRLVDRALRPIFPDNYHADTQVMITLIS
ADPEVQPDALAALAASSALAVSNIPFNGPISEVRVAKIDGQYKINPKTSELERATIDLIV
AATDKDICMVEGEMDECSEAEVVEALKVAHEAIKVQCQAQKELEAKVGKTEKREYNHETH
DEDLRAAVRAATYDKIYAVAQQQNPSKKGRSDGFRAVRDEYLASFPEGAEVNVGLIKTYL
HDLEWEASRRLVLDERTRLDGRKLDQIRQISAETGYLPGPHGSALFTRGETQSLTTVTLG
TKTDEQIVDQTMYQGYSKFLLHYNFPGFSTGEVKPNRGAGRREIGHGNLAHRSLKKVLPP
AEENPYTIRIVSDILESNGSSSMATVCAGTMALMDAGIKIKAPVAGIAMGLISDGDKYAV
LSDILGDEDHLGDMDFKVTGTEKGIVACQMDLKVDGLSYEVLAQALEQARVGRLHILGEM
KKGIADVRSDLKPHAPRAMVIKIDTNQIGAVIGPGGKVVQDIQKDSGAVVNIDEHDNAGW
VSIFATSKESMDKAVSRVKGIVAVPEVGETYVGKVKTIQPFGAFVEFMPGKDGLLHISEI
KWERLETMDGVLQVGEEVTVKLIDVDKKTGKYRLSRKVLLPKPENKNA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatcaccacgcaatccgttgcgctgcccgacgggcgggaaattaccatcgaa
accggcaaactggcccgtcaggccgacggagcggtggttgtacggttgggcgacacaatg
ctgttagccaccgttgtatccagtaaagaagccaaagaaggcgttgactttcttccctta
tccgttgattatcaagaaaaatttgcgtcggctggccggattccgggtagcttccaacgg
cgtgaaggtcgcctgggtgatcacgaaattctgattagtcgtttagttgaccgcgccctg
cggccaatatttcccgataattaccatgccgatacgcaggtaatgatcaccctgatttcg
gcagatcctgaagttcagcctgatgcactggctgcactggctgcctcgtcggcactggcc
gtatccaacatcccctttaacggaccgatctctgaagtacgcgtcgcgaaaatcgacggt
cagtacaagattaacccgaaaacctccgagctggaacgggctaccatcgacctgatcgta
gcggctacagacaaagatatttgtatggtggaaggcgaaatggacgaatgttcagaagcc
gaagtcgtggaagccctaaaggttgcgcacgaagctatcaaggtacaatgccaggcccag
aaggaactggaagctaaagttggcaaaacagaaaagcgggaatacaatcacgaaacgcac
gacgaagaccttcgtgctgctgttcgtgccgctacctacgataaaatttatgccgttgcc
caacagcagaaccctagcaaaaaaggccgttcggatggtttcagagccgttcgtgacgaa
tatttagcgtcgtttccagaaggagccgaggtgaatgtaggcttgatcaaaacctattta
catgatttggaatgggaagcgtcccgtcgtttagtgcttgacgagcgcacccgtctggat
ggccggaaactggaccagattcgtcagatctcagccgaaaccggttacctgcctggtccc
cacggctcagcgctctttacccggggcgaaacccagtcactgacgactgtaacgctcggt
acgaaaacggatgaacagattgtcgaccagacaatgtaccagggatacagcaaattcctc
ttgcattataacttccccggtttttcaacgggcgaagtaaaaccgaatcggggtgctggc
cgccgtgaaatcgggcatggtaacctggcccaccggtcgttgaaaaaggtattaccaccg
gctgaagaaaatccatatacaattcgcattgtttctgatattctcgagtcgaatggttcg
tcgtcgatggccaccgtctgtgccggaacaatggccctgatggatgccggtatcaaaatc
aaagcgcctgtagcgggtattgccatgggattgatttcggacggcgataagtatgcggtt
ctgtccgacattcttggagacgaagatcacctcggtgatatggacttcaaggtcacgggt
actgaaaaaggaatcgtggcttgtcagatggacctgaaagttgatggattatcctacgaa
gtgctggcgcaggcactggagcaggctcgtgtaggccggctgcatatcctgggtgaaatg
aaaaaaggcattgccgatgttcgttcggatttgaaaccacatgcaccccgtgcgatggtc
atcaaaatcgacactaaccagatcggagccgttattggacccggtggtaaagttgttcag
gacatccagaaagattcaggtgctgtcgttaacatcgacgaacatgacaatgccggttgg
gttagcatctttgccaccagcaaagaaagcatggacaaagccgtgtctcgtgtgaaagga
atcgtggccgtaccggaagttggcgaaacctacgttggtaaagtgaaaacgattcaaccc
ttcggtgccttcgttgaattcatgccaggcaaagatggtcttttgcacatttccgagatt
aagtgggagcgtctggagaccatggacggggtcttacaagtaggggaggaagtaacagtg
aagttgatcgacgttgataaaaagacaggaaagtaccgtttatcgcgtaaagttttgctg
ccaaagccagagaacaaaaatgcgtaa
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