Spirosoma radiotolerans: SD10_16680
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Entry
SD10_16680 CDS
T03819
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
srd
Spirosoma radiotolerans
Pathway
srd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD10_16680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srd03021
]
SD10_16680
03019 Messenger RNA biogenesis [BR:
srd03019
]
SD10_16680
Transcription machinery [BR:
srd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SD10_16680
Messenger RNA biogenesis [BR:
srd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SD10_16680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
NACHT
AAA_22
AAA_25
AAA
Mor
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
AKD56292
UniProt:
A0A0E3V7Z0
LinkDB
All DBs
Position
4090699..4092987
Genome browser
AA seq
762 aa
AA seq
DB search
MFKKEELDMKLLSELHPIAEQFGIRNISKFNKEKLVYEIIKQQSERPGPAAEETAPAGEA
PKRGRRTKAVTTPDVQPVTPVAADSPANQPVENPVALPATNDTTTTTPDTAKPRLRSRRD
RDVVTQPTALAEPVTPTEAPASPVSESSASVESSATPAVEPAPAVNGSAPAEVSNETVND
PQTARQPRENRERTTSGQRTTSFGQPARNRTDSDGTSTPNDRNFRTNNGRNDRNDRNGRQ
DLNQQRNQRTDGTQSGPRDARPRFDANRDRTDGIRDNNQRRDQRPRTQRVVTDETGLNYG
GQADEEFMTPTVITEDNAANMQTADANPTADTVAVVQPSGVPTETQDGQQPQSESSQTDQ
PVQHQIPQASREAQEYQNRIRRQYNQHIREFDGIIDNEGVLEIMQDGGYGFLRSADYNYL
ASPDDIYVSPSQIKLFGLKTGDTVRGAIRPPKEGEKYFALLRVSTVNGKTTEEIRDRIPF
EYLTPLFPEEQLHLSNRPENYSSRVLDLFAPIGKGQRGMIVAQPKTGKTVLLKEIANAIT
KNHPEVYLIVLLIDERPEEVTDMARSVNAEVISSTFDEQADRHVKVSSMVLEKAKRMVEC
GHDVVILLDSITRLARAYNTVVPSSGKILSGGVDANALHRPKRFFGAARNVENGGSLTII
ATALIDTGSKMDEVIFEEFKGTGNMELQLDRKLANKRVYPAIDVMASGTRREDLLLDKET
LQRVWILRKHMADMNAMEGMDFLLGHMKGTRSNEEFLISMNR
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagaaagaagaattagacatgaagcttctctcggagcttcaccccattgccgag
caattcgggattcgtaacattagcaaattcaataaggaaaaactagtttacgaaattata
aagcagcaatccgagcgcccaggcccggctgccgaagaaacagcccccgccggggaagcc
cccaagcgcggacgtcgtaccaaggcggttactacccctgacgtacaacccgttactcca
gtagcagccgatagtcctgctaaccaacccgtagaaaatccggtagcgctacctgctact
aacgatacaaccaccacaactccagatacggcgaaacctcgtttacgcagccgccgggat
cgggacgttgttacgcaaccaacagccttagctgaaccagtaacgccgacagaagcacct
gcttctccagtgagcgaaagttctgcctcggttgaaagcagcgccacaccagcggtcgag
ccagcaccagcagtcaacgggagcgcaccagccgaagtaagtaatgagactgtaaatgac
ccgcaaaccgcacgtcagccgcgcgaaaaccgcgaacggacgacatcaggccagcggact
acttccttcggtcaacccgcccgaaatcgtacggacagcgatggcacgtcgacaccaaac
gaccgtaatttccggacaaacaatggccgtaatgatcggaacgaccgcaatggtcggcag
gatttaaatcaacagcggaaccagcgtacggatggtacacaatccggtccacgggacgca
cgtccacggtttgatgccaaccgcgaccgtacggatggcatacgcgacaacaaccagcgt
cgggatcagcggccacgtacccagcgcgttgtaacggatgagaccggactgaactatggt
ggccaggccgacgaagagttcatgacgcctaccgttattacggaagataacgcggccaat
atgcaaacggccgacgccaacccaaccgctgatacagtagccgtggtccagccatcgggc
gtacccaccgaaacacaggatggtcaacagcctcaatcggaatccagccaaacggaccaa
ccagttcagcatcagattccacaagcatcgcgggaagcgcaggaataccagaaccgcatt
cgccgtcagtataaccagcacattcgcgaattcgatggcattatcgataacgaaggtgtt
ctggaaattatgcaggacggtggttatggctttctgcgctcagccgactacaattactta
gccagccccgatgatatttatgtatcaccatcgcagatcaaactattcggtttgaaaacc
ggcgataccgtgcgtggtgctattcgcccacccaaggaaggcgaaaaatactttgccctg
ctgcgtgtttcgaccgtcaatggcaaaaccacggaggagatccgtgaccggattcctttt
gaatacctcactcctcttttcccggaagaacagcttcatttgagcaatcgccccgaaaat
tattcgtcgcgcgtgttagatctgttcgcccccattggcaaaggtcagcggggtatgatt
gtagctcagcccaaaaccggtaagactgttctgctgaaagaaattgccaacgcgattacg
aagaaccacccggaggtatatctgattgtgctgctgattgacgaacgtcctgaagaagta
acggatatggcccgcagcgtgaatgcggaggttatttcctcaacctttgatgagcaggct
gaccgtcacgtaaaagtgtcgagtatggtgcttgagaaggccaaacggatggttgaatgc
ggccacgatgtggttattctgctcgattcgattacccgtctggccagggcctacaacacg
gttgtaccctcttcgggtaaaattctgtcgggtggtgttgatgccaacgccctgcaccgg
ccgaagcgcttctttggggctgcccggaatgtggagaatggtggttcattgaccatcatc
gccaccgccctgatcgatacgggttcgaaaatggacgaggttatctttgaagaatttaaa
ggtaccggcaacatggaactccagctcgaccgcaaactggcgaacaaacgggtttatccc
gctatcgacgttatggcatcgggcactcgtcgggaagatttgttgctggataaagaaaca
ctgcaacgagtctggattctgcgcaagcatatggccgatatgaatgcaatggaaggcatg
gatttcctccttggccatatgaaaggtacacggagtaatgaagagtttctcatttcgatg
aatcgataa
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