Spirosoma radiotolerans: SD10_23090
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Entry
SD10_23090 CDS
T03819
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
srd
Spirosoma radiotolerans
Pathway
srd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD10_23090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srd03019
]
SD10_23090
03400 DNA repair and recombination proteins [BR:
srd03400
]
SD10_23090
Enzymes [BR:
srd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SD10_23090
Messenger RNA biogenesis [BR:
srd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SD10_23090
DNA repair and recombination proteins [BR:
srd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SD10_23090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
DUF6806
Motif
Other DBs
NCBI-ProteinID:
AKD57340
UniProt:
A0A0E3ZZG6
LinkDB
All DBs
Position
complement(5693747..5695957)
Genome browser
AA seq
736 aa
AA seq
DB search
MMQVDQSVHSTLKERLKEIFGYSQFRGEQEAIIYSILAGRNTFVIMPTGAGKSLCYQLPA
IVSEGTAVVISPLIALMKNQVDQLNAFGINAQFLNSTLSKAEMNKVKKDTLNSSLKLLYI
APESLTKEENLDFLKKANISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIGNLPVIALT
ATATPKVQQDIQKNLQMEDANLYKTSFNRKNLYYEIRPKVDAKKQLIKYIKQNKGKSGII
YCLSRKTVEEIAELLRVNDVKALPYHAGLDPQTRMNNQDAFLNEDADVICATIAFGMGID
KPDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCLMFYSYDDIVKLEKFNKDKPVTERD
NAKHLLAEMVSYANLGVCRRRQLLGYFGEYMEKDCGFCDNCLKSPEKFKAQHEVVLALQT
VLQTDQRFDVAHLADVLTATGNQYVTSYEHDRLAVYGKGLEFNEDCNFWCSLIKQITIYG
YLEKDVDNYGILKVSQRGLNYIEDPYPITLTKDHDYEQQSTEIKEDEDKDSSPASGGVAY
DEELLGLLKALRKRIAKEKNLPPYVIFQETSMEEMATTYPTTREEMAQINGVGMGKVQKF
GRQFIDLITKYVEDNEIETAKDVVIKSTVNKSKVKIFIIQQIDRKVDLDEIAESKSLTME
DLMEEIEHICYSGTRLNLDYYINQVMDEDRQDEIFEYFMRAESDNIAVALREFGGDDFTE
QDLRLMRIKFLSEVAN
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaggttgatcagtcggtccattcaactcttaaagagcggctaaaagaaattttt
gggtatagccagtttcggggcgagcaggaagccattatttatagcatcctggcagggcga
aatacctttgtgattatgcccaccggagccggtaaatcgttatgctatcagctccctgct
attgtcagtgagggtacagccgttgttatttcgcccttgattgccttgatgaagaatcag
gtcgatcagcttaatgcgttcggtattaacgcgcaattccttaactcgacgctctccaag
gcggagatgaacaaggtcaaaaaggatacgcttaatagttcgcttaagctcttatacatt
gcgcccgagtcattgactaaggaagagaatttggattttttgaagaaagccaatatctcc
ttcgtcgctatcgacgaagcccactgtatttcagaatgggggcatgatttcagaccagag
taccgtaaaattcgcggcatcgttgataatattggcaacttaccggtcatagccctcaca
gcgaccgctacgcccaaagtgcagcaggatattcagaaaaacctgcagatggaagatgct
aatttatacaagacatccttcaatcgaaaaaatctatactacgaaatcagaccgaaggtc
gacgctaaaaagcagctcataaaatacatcaaacaaaacaaggggaagtcaggaatcatc
tattgtctcagtcgtaagacggttgaggagattgccgagctcctgcgtgtgaatgatgta
aaagcattgccttaccatgcgggtctggacccccaaacgcggatgaataaccaggatgcg
ttcctgaacgaagacgccgacgttatctgtgcgaccatcgcttttggaatgggcatcgac
aagcccgacgttcggttcgttattcactacgatgcgcccaagtcgctcgagggctattac
caggaaacgggccgggccgggcgcgatggtctggagggaaactgcctgatgttttacagc
tacgacgatattgttaagctcgaaaaattcaacaaagacaagcccgttaccgaacgcgat
aacgccaaacatctattggctgaaatggtttcctatgccaacctcggcgtttgccgccgt
cggcagttgcttggctattttggcgagtatatggagaaggactgcggtttctgcgacaac
tgcctgaagtcgccggagaaattcaaagcccagcacgaagtagtcctggcgctgcaaacg
gttctgcaaacggatcagcgtttcgatgtggcgcacttagccgatgtgttgacggctacg
ggaaatcagtatgtaacgagttatgaacacgaccgcctggccgtgtatggtaaaggactg
gaatttaatgaagattgcaacttctggtgctcgctgattaaacagatcacgatttacggt
tatctcgaaaaagacgtcgataactatgggatactaaaagtgtcccagcgcggcctgaat
tatattgaagatccttatccaatcacgctgacgaaggatcacgattatgagcagcagagt
acggaaataaaggaagatgaggacaaagattcgtcgccggcatcgggtggtgttgcctac
gatgaagaactgctcggattgctgaaagcccttcggaaacgaattgccaaagaaaaaaat
ctgccaccttatgttattttccaggagacatccatggaagagatggcgacaacttacccg
accacgcgcgaagagatggcgcagatcaatggtgtcgggatgggtaaggtgcagaaattc
ggacggcagttcattgatcttataacaaagtacgttgaagacaacgagatagaaacggcg
aaagacgtcgttatcaagtcgaccgttaataaatcgaaagtcaagatttttattattcag
cagattgaccggaaggtagacctcgatgagattgccgaatcgaagtcgctaacgatggaa
gacctgatggaagagattgaacacatctgttactcgggcacgcgcctaaacctcgattac
tacataaaccaggtaatggatgaagaccggcaggacgaaattttcgagtatttcatgcgg
gccgaaagcgataatatcgctgtagcattgcgtgaatttgggggcgatgatttcaccgaa
caagatctgcgcctgatgcgcataaaattcctgtcggaagtagctaactaa
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