Spirosoma radiotolerans: SD10_27080
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Entry
SD10_27080 CDS
T03819
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
srd
Spirosoma radiotolerans
Pathway
srd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SD10_27080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srd03400
]
SD10_27080
Enzymes [BR:
srd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SD10_27080
DNA repair and recombination proteins [BR:
srd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SD10_27080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
DUF928
Motif
Other DBs
NCBI-ProteinID:
AKD58023
UniProt:
A0A0E3ZZK1
LinkDB
All DBs
Position
complement(6633443..6636796)
Genome browser
AA seq
1117 aa
AA seq
DB search
MKPEELIGLYTDDNFIKLLTEPFSRKPTNEPQRLQIKGLAGSLDAVLASAIFKSVGGNHL
YILSDRDEAAYFFNDLQNLLGREVLLFPMSYKKPYQYEEVENANVLMRAEVLNKLNPAPK
DGLLMVTYPEALSEKVINKRSLQANTLTIRVGEKLDTHFVSELLQTYEFEKTDFVYEAGQ
FSVRGGIIDVFSFASEFPFRIDLFDDEVESIRKFNPESQLSTDPVEFINIIPNIQTKLTQ
ESREPFFDFLPDATTIWAKDVEFTLEIIEKCYEKAEQSFTTVVASSGGIQVVSDPNALWE
TRRSFLNELKRFRTVEFGRKFYFKTDGRQQYSSKPQPSFNKDFKRLIDTLGDNQAKGYTN
IIAGESFKQLDRLRTIFEELDPFVTFQPMNIGLREGFMDDALKIACFTDHQIFDRYYKYR
VQDKFSKSKALTLRELKTLQPGDYVTHVDYGIGRFAGLEKVDHAGNEQEAIRLIYRDNDI
LLVSIHSLHKIAKYSGREGGPPTMSKLGSQEWEQKKSRIRKQVKDIARELIALYAKRRTA
PGYAYSRDSFLQAELESSFIYEDTPDQAKATNDVKDDMERPHPMDRLVCGDVGFGKTEIA
IRAAFKAVTDNKQVAVLVPTTILAMQHYKTFTDRMADFPVKIEYINRFRTATQVKEILKG
VASGEIGILIGTHRIVNKDIKFKDLGLLVIDEEQKFGVKTKDRLKEMRVEVDVLTLTATP
IPRTLHFSLMGARDLSVIATPPPNRQPVTTEVHPFNEATIRDAVSYEIRRGGQVFFVHNR
VNDIESIGNLIMRLVPEARIGVAHGQMEGERLERIMTRFIEGDYDVLISTNIIESGLDIP
NANTILINNAHYFGLSDLHQMRGRVGRSNRKAFCYLLTPPPSVLTADARKRLQTLEDFSD
LGEGFKIAMRDLDIRGAGNLLGAEQSGFVNDLGFEMYHKVLDEAVQELRENEFKDLFETK
PGDLKLALPDTVIETDLQVVIPERYVSNISERLALYTRLDSLQNVEEVQAFRQEVIDRFG
PMPEEVENLIKMVNVRWKAEKLYLEKLTLKNNIMKGYFVSNGNDDFFKSDQFGKVIEYLK
RNPAKSSVKESKGRPIITHADVFSVEQLDEILGALTN
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
ttgaaacctgaagaattaatcggtttgtataccgatgataatttcataaaactgctgaca
gaaccgttttcgcgaaagcctaccaacgaacctcagcgtttacaaattaaaggcttggcg
ggcagtttagatgccgtgctggcatcagcaatcttcaagtcggtgggaggcaatcatctc
tatattctctcagaccgggatgaagctgcttactttttcaacgacttgcaaaatctgctc
ggccgtgaagtgctgctgtttccgatgtcgtacaagaaaccatatcagtacgaagaagtt
gaaaacgcgaatgtactcatgcgcgccgaggtactgaataagctcaatccggctccgaaa
gatggcttgctcatggtaacctatccggaagctctctcggaaaaagtgatcaacaaacga
tcgttacaagccaacacattgacaattcgggtaggggagaaactagatactcatttcgta
tcagaactactgcaaacctatgagtttgagaagaccgactttgtgtatgaagcgggtcag
ttttcggtgcgcgggggaatcatagacgttttttcattcgcaagtgaatttccatttcga
attgatctattcgacgatgaggttgaaagcattcgcaaattcaatcccgaatcacagctt
tctacagaccctgttgagttcatcaacatcatcccaaacatccagactaagcttactcag
gaaagcagagaaccgttcttcgatttcctaccggatgctacaaccatatgggcgaaggat
gtggagtttaccctggaaattattgagaaatgctacgagaaggccgaacaaagctttaca
accgtagtcgcgtcgagcgggggtattcaggttgtttcagacccaaacgctttgtgggaa
acccgacggtcattcctgaatgaattgaaacggttccgtaccgttgagttcgggcgcaag
ttttacttcaaaaccgacggaaggcaacaatacagctcgaagccacagccctcttttaat
aaagatttcaagcgcttaattgacacactgggtgacaatcaggcgaagggatacactaac
attattgcgggtgaatcctttaaacaactggaccgtttacgaacaattttcgaagaacta
gatccgttcgttacgtttcagccgatgaacattgggctccgcgagggattcatggacgac
gccctaaagattgcctgttttaccgaccaccaaattttcgatcggtattacaagtatcgg
gttcaggataagttttcgaaatcgaaagccttgacgttgcgcgaactgaaaaccctccag
ccgggcgattatgtgacgcacgttgattacggcattggccgatttgcggggcttgagaaa
gtggatcacgcaggtaacgagcaggaagccatccggctcatttaccgcgataatgatatc
ctgctggttagcatccatagtttgcacaagattgccaaatacagtggacgggagggtggg
ccgcctaccatgagcaagttgggctcgcaggaatgggagcaaaaaaaatcacgtatccgc
aagcaggtcaaagacattgcccgcgaattaattgcgctctatgccaaacggcgaacggca
cccggatacgcttatagccgagatagctttctgcaagccgagttggaatcgtcttttata
tatgaagacacccccgatcaggccaaggcaacaaatgacgtaaaagatgacatggaacga
ccacaccccatggaccggctggtatgtggcgatgttggttttggcaaaacagaaatagct
atccgagccgctttcaaagccgtaacagacaacaaacaggtggccgtactcgtcccaaca
acgattctggccatgcaacattacaagacctttaccgaccggatggccgatttcccggtt
aagattgagtacatcaatcggtttcggacagccactcaggtaaaggaaattctaaaaggt
gtcgcttcgggcgagattggaatattaataggcacgcaccggattgtcaacaaggacatc
aagttcaaggatttaggcctgctggtcattgatgaggaacagaaattcggggtaaaaaca
aaggatcgcttaaaagaaatgcgggttgaagttgatgtacttaccctaacggcaacaccc
attcccagaaccctgcatttctcgctcatgggtgcccgtgacttatcggtcattgctact
ccgccacccaatcgtcaacctgttacgaccgaggttcacccatttaatgaagctacaatt
cgggatgctgttagttatgagatccggcggggtggacaagtcttctttgttcataaccgg
gtcaatgatattgagtccatcggtaacctaattatgcggctcgtacccgaggctcgcatc
ggcgtagcacacggccaaatggaaggcgaacgactggagcggattatgacccgcttcatt
gagggtgattatgatgtattgatctcaaccaacattattgaatcgggactggacattccc
aatgccaacacgatattgataaacaacgcccattatttcggactgtcagacttacaccaa
atgcgcggtagggtagggcgatcgaaccggaaagcattctgttatcttctgacgcccccg
ccgtcggtgctcacagccgatgcgcgcaaacggctccaaaccctcgaagacttttctgat
ctgggtgaaggctttaaaattgccatgcgtgatctggatattcggggcgcgggtaatctg
ctgggtgctgaacagagcgggtttgtcaatgatcttggttttgaaatgtaccataaagta
cttgatgaggctgttcaggaattacgcgagaatgaatttaaagacctcttcgaaacgaaa
cctggtgatttaaaactagcccttccggataccgttattgaaactgatttacaggtcgtt
attcctgaacgatacgtatcgaatatttcagaacgactggcgttatatactcgcctggac
agccttcaaaacgtggaagaagtgcaggcctttcgtcaggaagtgatcgaccggtttggg
cctatgcctgaagaagtcgaaaacctaatcaaaatggtgaacgttcgctggaaagccgag
aagttataccttgaaaaactgacgcttaagaataatatcatgaaaggatacttcgtttct
aacgggaacgatgacttctttaaatctgaccaatttggcaaggtaattgagtatttaaag
cgaaacccagccaaaagttcagtaaaagaatcaaaagggcgacccatcattacacatgcc
gacgttttttctgtcgagcaattggatgaaatactgggtgccttgacaaattaa
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