Salpingoeca rosetta: PTSG_00386
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Entry
PTSG_00386 CDS
T04136
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
sre
Salpingoeca rosetta
Pathway
sre03018
RNA degradation
sre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PTSG_00386
09123 Folding, sorting and degradation
03018 RNA degradation
PTSG_00386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sre03019
]
PTSG_00386
03041 Spliceosome [BR:
sre03041
]
PTSG_00386
Messenger RNA biogenesis [BR:
sre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PTSG_00386
mRNA degradation factors
5'-3' decay
Lsm complex
PTSG_00386
Spliceosome [BR:
sre03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PTSG_00386
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Mlf1IP
Motif
Other DBs
NCBI-GeneID:
16067927
NCBI-ProteinID:
XP_004998935
UniProt:
F2TWC0
LinkDB
All DBs
Position
Unknown
AA seq
87 aa
AA seq
DB search
MSQVLPLELIDKCIGSRIHVVMKSDKELVGWLKGFDEFVNMVLTDVTEFENGPEGIVTSK
RKEILLSGTHIAMLVPGGEGPVATEEA
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaagtgttgccgcttgagctgattgacaagtgcattggctccaggatccacgtt
gtcatgaagtctgacaaagagcttgttggctggctcaaaggattcgacgagtttgtgaac
atggtgttgacagacgtgactgaattcgagaatggacccgagggcattgtgacatcgaag
cgaaaggagatcctgttgagcggcacacacattgccatgcttgtgcccggcggcgaagga
cctgtggcaacagaggaggcgtag
DBGET
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